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LMF1 (lipase maturation factor 1)

Identity

Alias (NCBI)C16orf26
HMFN1876
JFP11
TMEM112
TMEM112A
HGNC (Hugo) LMF1
HGNC Alias symbFLJ12681
JFP11
FLJ22302
TMEM112A
HGNC Previous nameC16orf26
 TMEM112
HGNC Previous namechromosome 16 open reading frame 26
 transmembrane protein 112
LocusID (NCBI) 64788
Atlas_Id 54425
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 853636 and ends at 970984 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BCL7C (16p11.2) / LMF1 (16p13.3)CENPBD1 (16q24.3) / LMF1 (16p13.3)KIF21A (12q12) / LMF1 (16p13.3)
LMF1 (16p13.3) / BZRAP1 (17q22)LMF1 (16p13.3) / KLC2 (11q13.2)LMF1 (16p13.3) / UMOD (16p12.3)
PDXDC1 (16p13.11) / LMF1 (16p13.3)KIF21A 12q12 / LMF1 16p13.3PDXDC1 16p13.11 / LMF1 16p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)LMF1   14154
Cards
Entrez_Gene (NCBI)LMF1    lipase maturation factor 1
AliasesC16orf26; HMFN1876; JFP11; TMEM112; 
TMEM112A
GeneCards (Weizmann)LMF1
Ensembl hg19 (Hinxton)ENSG00000103227 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103227 [Gene_View]  ENSG00000103227 [Sequence]  chr16:853636-970984 [Contig_View]  LMF1 [Vega]
ICGC DataPortalENSG00000103227
TCGA cBioPortalLMF1
AceView (NCBI)LMF1
Genatlas (Paris)LMF1
SOURCE (Princeton)LMF1
Genetics Home Reference (NIH)LMF1
Genomic and cartography
GoldenPath hg38 (UCSC)LMF1  -     chr16:853636-970984 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LMF1  -     16p13.3   [Description]    (hg19-Feb_2009)
GoldenPathLMF1 - 16p13.3 [CytoView hg19]  LMF1 - 16p13.3 [CytoView hg38]
ImmunoBaseENSG00000103227
Genome Data Viewer NCBILMF1 [Mapview hg19]  
OMIM246650   611761   
Gene and transcription
Genbank (Entrez)AB075873 AK022743 AK025955 AK093050 AK125201
RefSeq transcript (Entrez)NM_001352017 NM_001352018 NM_001352019 NM_001352020 NM_001352021 NM_022773
Consensus coding sequences : CCDS (NCBI)LMF1
Gene ExpressionLMF1 [ NCBI-GEO ]   LMF1 [ EBI - ARRAY_EXPRESS ]   LMF1 [ SEEK ]   LMF1 [ MEM ]
Gene Expression Viewer (FireBrowse)LMF1 [ Firebrowse - Broad ]
GenevisibleExpression of LMF1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64788
GTEX Portal (Tissue expression)LMF1
Human Protein AtlasENSG00000103227-LMF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96S06   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96S06  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96S06
PhosPhoSitePlusQ96S06
Domains : Interpro (EBI)LMF   
Domain families : Pfam (Sanger)LMF1 (PF06762)   
Domain families : Pfam (NCBI)pfam06762   
Conserved Domain (NCBI)LMF1
SuperfamilyQ96S06
AlphaFold pdb e-kbQ96S06   
Human Protein Atlas [tissue]ENSG00000103227-LMF1 [tissue]
HPRD07789
Protein Interaction databases
DIP (DOE-UCLA)Q96S06
IntAct (EBI)Q96S06
BioGRIDLMF1
STRING (EMBL)LMF1
ZODIACLMF1
Ontologies - Pathways
QuickGOQ96S06
Ontology : AmiGOendoplasmic reticulum membrane  endoplasmic reticulum membrane  triglyceride metabolic process  integral component of membrane  regulation of lipoprotein lipase activity  protein maturation  
Ontology : EGO-EBIendoplasmic reticulum membrane  endoplasmic reticulum membrane  triglyceride metabolic process  integral component of membrane  regulation of lipoprotein lipase activity  protein maturation  
NDEx NetworkLMF1
Atlas of Cancer Signalling NetworkLMF1
Wikipedia pathwaysLMF1
Orthology - Evolution
OrthoDB64788
GeneTree (enSembl)ENSG00000103227
Phylogenetic Trees/Animal Genes : TreeFamLMF1
Homologs : HomoloGeneLMF1
Homology/Alignments : Family Browser (UCSC)LMF1
Gene fusions - Rearrangements
Fusion : MitelmanKIF21A/LMF1 [12q12/16p13.3]  
Fusion : MitelmanLMF1/UMOD [16p13.3/16p12.3]  
Fusion : MitelmanPDXDC1/LMF1 [16p13.11/16p13.3]  
Fusion : QuiverLMF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLMF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LMF1
dbVarLMF1
ClinVarLMF1
MonarchLMF1
1000_GenomesLMF1 
Exome Variant ServerLMF1
GNOMAD BrowserENSG00000103227
Varsome BrowserLMF1
ACMGLMF1 variants
VarityQ96S06
Genomic Variants (DGV)LMF1 [DGVbeta]
DECIPHERLMF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLMF1 
Mutations
ICGC Data PortalLMF1 
TCGA Data PortalLMF1 
Broad Tumor PortalLMF1
OASIS PortalLMF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLMF1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLMF1
Mutations and Diseases : HGMDLMF1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaLMF1
DgiDB (Drug Gene Interaction Database)LMF1
DoCM (Curated mutations)LMF1
CIViC (Clinical Interpretations of Variants in Cancer)LMF1
Cancer3DLMF1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM246650    611761   
Orphanet23491   
DisGeNETLMF1
MedgenLMF1
Genetic Testing Registry LMF1
NextProtQ96S06 [Medical]
GENETestsLMF1
Target ValidationLMF1
Huge Navigator LMF1 [HugePedia]
ClinGenLMF1
Clinical trials, drugs, therapy
MyCancerGenomeLMF1
Protein Interactions : CTDLMF1
Pharm GKB GenePA25540
PharosQ96S06
Clinical trialLMF1
Miscellaneous
canSAR (ICR)LMF1
HarmonizomeLMF1
DataMed IndexLMF1
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLMF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:16:27 CEST 2021

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