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LMF2 (lipase maturation factor 2)

Identity

Alias_namesTMEM153
TMEM112B
transmembrane protein 153
transmembrane protein 112B
Other alias
HGNC (Hugo) LMF2
LocusID (NCBI) 91289
Atlas_Id 66138
Location 22q13.33  [Link to chromosome band 22q13]
Location_base_pair Starts at 50941376 and ends at 50946135 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LMF2 (22q13.33) / ARPC4 (3p25.3)LMF2 (22q13.33) / CTRL (16q22.1)LMF2 (22q13.33) / TYMP (22q13.33)
TRPC4AP (20q11.22) / LMF2 (22q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LMF2   25096
Cards
Entrez_Gene (NCBI)LMF2  91289  lipase maturation factor 2
AliasesTMEM112B; TMEM153
GeneCards (Weizmann)LMF2
Ensembl hg19 (Hinxton)ENSG00000100258 [Gene_View]  chr22:50941376-50946135 [Contig_View]  LMF2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000100258 [Gene_View]  chr22:50941376-50946135 [Contig_View]  LMF2 [Vega]
ICGC DataPortalENSG00000100258
TCGA cBioPortalLMF2
AceView (NCBI)LMF2
Genatlas (Paris)LMF2
WikiGenes91289
SOURCE (Princeton)LMF2
Genetics Home Reference (NIH)LMF2
Genomic and cartography
GoldenPath hg19 (UCSC)LMF2  -     chr22:50941376-50946135 -  22q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LMF2  -     22q13.33   [Description]    (hg38-Dec_2013)
EnsemblLMF2 - 22q13.33 [CytoView hg19]  LMF2 - 22q13.33 [CytoView hg38]
Mapping of homologs : NCBILMF2 [Mapview hg19]  LMF2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK130818 BC002942 BC014652 BC021143 BI917400
RefSeq transcript (Entrez)NM_033200
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011526 NW_004929431
Consensus coding sequences : CCDS (NCBI)LMF2
Cluster EST : UnigeneHs.150540 [ NCBI ]
CGAP (NCI)Hs.150540
Alternative Splicing GalleryENSG00000100258
Gene ExpressionLMF2 [ NCBI-GEO ]   LMF2 [ EBI - ARRAY_EXPRESS ]   LMF2 [ SEEK ]   LMF2 [ MEM ]
Gene Expression Viewer (FireBrowse)LMF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91289
GTEX Portal (Tissue expression)LMF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BU23   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BU23  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BU23
Splice isoforms : SwissVarQ9BU23
PhosPhoSitePlusQ9BU23
Domains : Interpro (EBI)LMF   
Domain families : Pfam (Sanger)LMF1 (PF06762)   
Domain families : Pfam (NCBI)pfam06762   
Conserved Domain (NCBI)LMF2
DMDM Disease mutations91289
Blocks (Seattle)LMF2
SuperfamilyQ9BU23
Human Protein AtlasENSG00000100258
Peptide AtlasQ9BU23
HPRD12519
IPIIPI00385495   IPI00852693   IPI00854764   IPI00964165   
Protein Interaction databases
DIP (DOE-UCLA)Q9BU23
IntAct (EBI)Q9BU23
FunCoupENSG00000100258
BioGRIDLMF2
STRING (EMBL)LMF2
ZODIACLMF2
Ontologies - Pathways
QuickGOQ9BU23
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  membrane  integral component of membrane  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  membrane  integral component of membrane  
NDEx NetworkLMF2
Atlas of Cancer Signalling NetworkLMF2
Wikipedia pathwaysLMF2
Orthology - Evolution
OrthoDB91289
GeneTree (enSembl)ENSG00000100258
Phylogenetic Trees/Animal Genes : TreeFamLMF2
HOVERGENQ9BU23
HOGENOMQ9BU23
Homologs : HomoloGeneLMF2
Homology/Alignments : Family Browser (UCSC)LMF2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLMF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LMF2
dbVarLMF2
ClinVarLMF2
1000_GenomesLMF2 
Exome Variant ServerLMF2
ExAC (Exome Aggregation Consortium)LMF2 (select the gene name)
Genetic variants : HAPMAP91289
Genomic Variants (DGV)LMF2 [DGVbeta]
DECIPHER (Syndromes)22:50941376-50946135  ENSG00000100258
CONAN: Copy Number AnalysisLMF2 
Mutations
ICGC Data PortalLMF2 
TCGA Data PortalLMF2 
Broad Tumor PortalLMF2
OASIS PortalLMF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLMF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLMF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LMF2
DgiDB (Drug Gene Interaction Database)LMF2
DoCM (Curated mutations)LMF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LMF2 (select a term)
intoGenLMF2
Cancer3DLMF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLMF2
Genetic Testing Registry LMF2
NextProtQ9BU23 [Medical]
TSGene91289
GENETestsLMF2
Huge Navigator LMF2 [HugePedia]
snp3D : Map Gene to Disease91289
BioCentury BCIQLMF2
ClinGenLMF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91289
Chemical/Pharm GKB GenePA162394144
Clinical trialLMF2
Miscellaneous
canSAR (ICR)LMF2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLMF2
EVEXLMF2
GoPubMedLMF2
iHOPLMF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:14:36 CET 2017

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