Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LMNTD1 (lamin tail domain containing 1)

Identity

Alias_namesIFLTD1
intermediate filament tail domain containing 1
Alias_symbol (synonym)FLJ36004
Pas1c1
Other aliasPAS1C1
HGNC (Hugo) LMNTD1
LocusID (NCBI) 160492
Atlas_Id 56172
Location 12p12.1  [Link to chromosome band 12p12]
Location_base_pair Starts at 25649251 and ends at 25801496 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KRAS (12p12.1) / LMNTD1 (12p12.1)MED1 (17q12) / LMNTD1 (12p12.1)ST8SIA1 (12p12.1) / LMNTD1 (12p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LMNTD1   26683
Cards
Entrez_Gene (NCBI)LMNTD1  160492  lamin tail domain containing 1
AliasesIFLTD1; PAS1C1
GeneCards (Weizmann)LMNTD1
Ensembl hg19 (Hinxton)ENSG00000152936 [Gene_View]  chr12:25649251-25801496 [Contig_View]  LMNTD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000152936 [Gene_View]  chr12:25649251-25801496 [Contig_View]  LMNTD1 [Vega]
ICGC DataPortalENSG00000152936
TCGA cBioPortalLMNTD1
AceView (NCBI)LMNTD1
Genatlas (Paris)LMNTD1
WikiGenes160492
SOURCE (Princeton)LMNTD1
Genetics Home Reference (NIH)LMNTD1
Genomic and cartography
GoldenPath hg19 (UCSC)LMNTD1  -     chr12:25649251-25801496 -  12p12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LMNTD1  -     12p12.1   [Description]    (hg38-Dec_2013)
EnsemblLMNTD1 - 12p12.1 [CytoView hg19]  LMNTD1 - 12p12.1 [CytoView hg38]
Mapping of homologs : NCBILMNTD1 [Mapview hg19]  LMNTD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001145727 NM_001145728 NM_001145729 NM_001256266 NM_152590
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LMNTD1
Cluster EST : UnigeneHs.44647 [ NCBI ]
CGAP (NCI)Hs.44647
Alternative Splicing GalleryENSG00000152936
Gene ExpressionLMNTD1 [ NCBI-GEO ]   LMNTD1 [ EBI - ARRAY_EXPRESS ]   LMNTD1 [ SEEK ]   LMNTD1 [ MEM ]
Gene Expression Viewer (FireBrowse)LMNTD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)160492
GTEX Portal (Tissue expression)LMNTD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9Z9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9Z9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9Z9
Splice isoforms : SwissVarQ8N9Z9
PhosPhoSitePlusQ8N9Z9
Domains : Interpro (EBI)IF    Lamin_tail_dom   
Domain families : Pfam (Sanger)LTD (PF00932)   
Domain families : Pfam (NCBI)pfam00932   
Conserved Domain (NCBI)LMNTD1
DMDM Disease mutations160492
Blocks (Seattle)LMNTD1
SuperfamilyQ8N9Z9
Human Protein AtlasENSG00000152936
Peptide AtlasQ8N9Z9
HPRD08768
IPIIPI00167858   IPI00792266   IPI00973558   IPI00923576   IPI00923584   IPI01015823   IPI01014242   IPI01013093   IPI01013350   IPI01010784   IPI01011331   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9Z9
IntAct (EBI)Q8N9Z9
FunCoupENSG00000152936
BioGRIDLMNTD1
STRING (EMBL)LMNTD1
ZODIACLMNTD1
Ontologies - Pathways
QuickGOQ8N9Z9
Ontology : AmiGOstructural molecule activity  nuclear envelope  cytoplasm  intermediate filament  cell proliferation  
Ontology : EGO-EBIstructural molecule activity  nuclear envelope  cytoplasm  intermediate filament  cell proliferation  
NDEx NetworkLMNTD1
Atlas of Cancer Signalling NetworkLMNTD1
Wikipedia pathwaysLMNTD1
Orthology - Evolution
OrthoDB160492
GeneTree (enSembl)ENSG00000152936
Phylogenetic Trees/Animal Genes : TreeFamLMNTD1
HOVERGENQ8N9Z9
HOGENOMQ8N9Z9
Homologs : HomoloGeneLMNTD1
Homology/Alignments : Family Browser (UCSC)LMNTD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLMNTD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LMNTD1
dbVarLMNTD1
ClinVarLMNTD1
1000_GenomesLMNTD1 
Exome Variant ServerLMNTD1
ExAC (Exome Aggregation Consortium)LMNTD1 (select the gene name)
Genetic variants : HAPMAP160492
Genomic Variants (DGV)LMNTD1 [DGVbeta]
DECIPHER (Syndromes)12:25649251-25801496  ENSG00000152936
CONAN: Copy Number AnalysisLMNTD1 
Mutations
ICGC Data PortalLMNTD1 
TCGA Data PortalLMNTD1 
Broad Tumor PortalLMNTD1
OASIS PortalLMNTD1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLMNTD1
BioMutasearch LMNTD1
DgiDB (Drug Gene Interaction Database)LMNTD1
DoCM (Curated mutations)LMNTD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LMNTD1 (select a term)
intoGenLMNTD1
Cancer3DLMNTD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLMNTD1
Genetic Testing Registry LMNTD1
NextProtQ8N9Z9 [Medical]
TSGene160492
GENETestsLMNTD1
Huge Navigator LMNTD1 [HugePedia]
snp3D : Map Gene to Disease160492
BioCentury BCIQLMNTD1
ClinGenLMNTD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD160492
Chemical/Pharm GKB GenePA162391895
Clinical trialLMNTD1
Miscellaneous
canSAR (ICR)LMNTD1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLMNTD1
EVEXLMNTD1
GoPubMedLMNTD1
iHOPLMNTD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:13:03 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.