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LMNTD2 (lamin tail domain containing 2)

Identity

Alias_namesC11orf35
chromosome 11 open reading frame 35
Alias_symbol (synonym)MGC35138
Other alias
HGNC (Hugo) LMNTD2
LocusID (NCBI) 256329
Atlas_Id 66143
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 554850 and ends at 560779 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LMNTD2   28561
Cards
Entrez_Gene (NCBI)LMNTD2  256329  lamin tail domain containing 2
AliasesC11orf35
GeneCards (Weizmann)LMNTD2
Ensembl hg19 (Hinxton)ENSG00000185522 [Gene_View]  chr11:554850-560779 [Contig_View]  LMNTD2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000185522 [Gene_View]  chr11:554850-560779 [Contig_View]  LMNTD2 [Vega]
ICGC DataPortalENSG00000185522
TCGA cBioPortalLMNTD2
AceView (NCBI)LMNTD2
Genatlas (Paris)LMNTD2
WikiGenes256329
SOURCE (Princeton)LMNTD2
Genetics Home Reference (NIH)LMNTD2
Genomic and cartography
GoldenPath hg19 (UCSC)LMNTD2  -     chr11:554850-560779 -  11p15.5   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LMNTD2  -     11p15.5   [Description]    (hg38-Dec_2013)
EnsemblLMNTD2 - 11p15.5 [CytoView hg19]  LMNTD2 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBILMNTD2 [Mapview hg19]  LMNTD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI539379 BC037936 BC039077 BX384084 BX384085
RefSeq transcript (Entrez)NM_173573
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NT_187586 NW_004929378
Consensus coding sequences : CCDS (NCBI)LMNTD2
Cluster EST : UnigeneHs.669395 [ NCBI ]
CGAP (NCI)Hs.669395
Alternative Splicing GalleryENSG00000185522
Gene ExpressionLMNTD2 [ NCBI-GEO ]   LMNTD2 [ EBI - ARRAY_EXPRESS ]   LMNTD2 [ SEEK ]   LMNTD2 [ MEM ]
Gene Expression Viewer (FireBrowse)LMNTD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256329
GTEX Portal (Tissue expression)LMNTD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXW0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXW0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXW0
Splice isoforms : SwissVarQ8IXW0
PhosPhoSitePlusQ8IXW0
Domains : Interpro (EBI)Lamin_tail_dom   
Domain families : Pfam (Sanger)LTD (PF00932)   
Domain families : Pfam (NCBI)pfam00932   
Conserved Domain (NCBI)LMNTD2
DMDM Disease mutations256329
Blocks (Seattle)LMNTD2
SuperfamilyQ8IXW0
Human Protein AtlasENSG00000185522
Peptide AtlasQ8IXW0
HPRD14600
IPIIPI00217662   IPI00916211   IPI00980487   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXW0
IntAct (EBI)Q8IXW0
FunCoupENSG00000185522
BioGRIDLMNTD2
STRING (EMBL)LMNTD2
ZODIACLMNTD2
Ontologies - Pathways
QuickGOQ8IXW0
Ontology : AmiGOpositive regulation of mRNA splicing, via spliceosome  
Ontology : EGO-EBIpositive regulation of mRNA splicing, via spliceosome  
NDEx NetworkLMNTD2
Atlas of Cancer Signalling NetworkLMNTD2
Wikipedia pathwaysLMNTD2
Orthology - Evolution
OrthoDB256329
GeneTree (enSembl)ENSG00000185522
Phylogenetic Trees/Animal Genes : TreeFamLMNTD2
HOVERGENQ8IXW0
HOGENOMQ8IXW0
Homologs : HomoloGeneLMNTD2
Homology/Alignments : Family Browser (UCSC)LMNTD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLMNTD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LMNTD2
dbVarLMNTD2
ClinVarLMNTD2
1000_GenomesLMNTD2 
Exome Variant ServerLMNTD2
ExAC (Exome Aggregation Consortium)LMNTD2 (select the gene name)
Genetic variants : HAPMAP256329
Genomic Variants (DGV)LMNTD2 [DGVbeta]
DECIPHER (Syndromes)11:554850-560779  ENSG00000185522
CONAN: Copy Number AnalysisLMNTD2 
Mutations
ICGC Data PortalLMNTD2 
TCGA Data PortalLMNTD2 
Broad Tumor PortalLMNTD2
OASIS PortalLMNTD2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLMNTD2
BioMutasearch LMNTD2
DgiDB (Drug Gene Interaction Database)LMNTD2
DoCM (Curated mutations)LMNTD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LMNTD2 (select a term)
intoGenLMNTD2
Cancer3DLMNTD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLMNTD2
Genetic Testing Registry LMNTD2
NextProtQ8IXW0 [Medical]
TSGene256329
GENETestsLMNTD2
Huge Navigator LMNTD2 [HugePedia]
snp3D : Map Gene to Disease256329
BioCentury BCIQLMNTD2
ClinGenLMNTD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256329
Chemical/Pharm GKB GenePA142672302
Clinical trialLMNTD2
Miscellaneous
canSAR (ICR)LMNTD2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLMNTD2
EVEXLMNTD2
GoPubMedLMNTD2
iHOPLMNTD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:14:37 CET 2017

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