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LMO4 (LIM domain only 4)

Identity

Other alias-
HGNC (Hugo) LMO4
LocusID (NCBI) 8543
Atlas_Id 41166
Location 1p22.3  [Link to chromosome band 1p22]
Location_base_pair Starts at 87794151 and ends at 87814607 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EP400 (12q24.33) / LMO4 (1p22.3)LMO4 (1p22.3) / LMO4 (1p22.3)LMO4 (1p22.3) / RGS3 (9q32)
LMO4 (1p22.3) / UROD (1p34.1)SRSF1 (17q22) / LMO4 (1p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LMO4   6644
Cards
Entrez_Gene (NCBI)LMO4  8543  LIM domain only 4
Aliases
GeneCards (Weizmann)LMO4
Ensembl hg19 (Hinxton)ENSG00000143013 [Gene_View]  chr1:87794151-87814607 [Contig_View]  LMO4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000143013 [Gene_View]  chr1:87794151-87814607 [Contig_View]  LMO4 [Vega]
ICGC DataPortalENSG00000143013
TCGA cBioPortalLMO4
AceView (NCBI)LMO4
Genatlas (Paris)LMO4
WikiGenes8543
SOURCE (Princeton)LMO4
Genetics Home Reference (NIH)LMO4
Genomic and cartography
GoldenPath hg19 (UCSC)LMO4  -     chr1:87794151-87814607 +  1p22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LMO4  -     1p22.3   [Description]    (hg38-Dec_2013)
EnsemblLMO4 - 1p22.3 [CytoView hg19]  LMO4 - 1p22.3 [CytoView hg38]
Mapping of homologs : NCBILMO4 [Mapview hg19]  LMO4 [Mapview hg38]
OMIM603129   
Gene and transcription
Genbank (Entrez)AI962216 AK292578 AW162477 AY321514 BC003600
RefSeq transcript (Entrez)NM_006769
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)LMO4
Cluster EST : UnigeneHs.436792 [ NCBI ]
CGAP (NCI)Hs.436792
Alternative Splicing GalleryENSG00000143013
Gene ExpressionLMO4 [ NCBI-GEO ]   LMO4 [ EBI - ARRAY_EXPRESS ]   LMO4 [ SEEK ]   LMO4 [ MEM ]
Gene Expression Viewer (FireBrowse)LMO4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8543
GTEX Portal (Tissue expression)LMO4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61968   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP61968  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP61968
Splice isoforms : SwissVarP61968
PhosPhoSitePlusP61968
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)Znf_LIM   
Domain families : Pfam (Sanger)LIM (PF00412)   
Domain families : Pfam (NCBI)pfam00412   
Domain families : Smart (EMBL)LIM (SM00132)  
Conserved Domain (NCBI)LMO4
DMDM Disease mutations8543
Blocks (Seattle)LMO4
PDB (SRS)2L4Z   
PDB (PDBSum)2L4Z   
PDB (IMB)2L4Z   
PDB (RSDB)2L4Z   
Structural Biology KnowledgeBase2L4Z   
SCOP (Structural Classification of Proteins)2L4Z   
CATH (Classification of proteins structures)2L4Z   
SuperfamilyP61968
Human Protein AtlasENSG00000143013
Peptide AtlasP61968
HPRD09122
IPIIPI00297604   
Protein Interaction databases
DIP (DOE-UCLA)P61968
IntAct (EBI)P61968
FunCoupENSG00000143013
BioGRIDLMO4
STRING (EMBL)LMO4
ZODIACLMO4
Ontologies - Pathways
QuickGOP61968
Ontology : AmiGOenhancer sequence-specific DNA binding  neural tube closure  ventricular septum development  transcription factor activity, sequence-specific DNA binding  protein binding  transcription factor complex  transcription from RNA polymerase II promoter  transcription factor binding  zinc ion binding  ventral spinal cord interneuron differentiation  spinal cord motor neuron differentiation  spinal cord association neuron differentiation  regulation of cell migration  cell leading edge  negative regulation of protein complex assembly  positive regulation of kinase activity  regulation of cell fate specification  positive regulation of transcription from RNA polymerase II promoter  thymus development  regulation of cell activation  
Ontology : EGO-EBIenhancer sequence-specific DNA binding  neural tube closure  ventricular septum development  transcription factor activity, sequence-specific DNA binding  protein binding  transcription factor complex  transcription from RNA polymerase II promoter  transcription factor binding  zinc ion binding  ventral spinal cord interneuron differentiation  spinal cord motor neuron differentiation  spinal cord association neuron differentiation  regulation of cell migration  cell leading edge  negative regulation of protein complex assembly  positive regulation of kinase activity  regulation of cell fate specification  positive regulation of transcription from RNA polymerase II promoter  thymus development  regulation of cell activation  
NDEx NetworkLMO4
Atlas of Cancer Signalling NetworkLMO4
Wikipedia pathwaysLMO4
Orthology - Evolution
OrthoDB8543
GeneTree (enSembl)ENSG00000143013
Phylogenetic Trees/Animal Genes : TreeFamLMO4
HOVERGENP61968
HOGENOMP61968
Homologs : HomoloGeneLMO4
Homology/Alignments : Family Browser (UCSC)LMO4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLMO4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LMO4
dbVarLMO4
ClinVarLMO4
1000_GenomesLMO4 
Exome Variant ServerLMO4
ExAC (Exome Aggregation Consortium)LMO4 (select the gene name)
Genetic variants : HAPMAP8543
Genomic Variants (DGV)LMO4 [DGVbeta]
DECIPHER (Syndromes)1:87794151-87814607  ENSG00000143013
CONAN: Copy Number AnalysisLMO4 
Mutations
ICGC Data PortalLMO4 
TCGA Data PortalLMO4 
Broad Tumor PortalLMO4
OASIS PortalLMO4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLMO4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLMO4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LMO4
DgiDB (Drug Gene Interaction Database)LMO4
DoCM (Curated mutations)LMO4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LMO4 (select a term)
intoGenLMO4
Cancer3DLMO4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603129   
Orphanet
MedgenLMO4
Genetic Testing Registry LMO4
NextProtP61968 [Medical]
TSGene8543
GENETestsLMO4
Huge Navigator LMO4 [HugePedia]
snp3D : Map Gene to Disease8543
BioCentury BCIQLMO4
ClinGenLMO4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8543
Chemical/Pharm GKB GenePA30410
Clinical trialLMO4
Miscellaneous
canSAR (ICR)LMO4 (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLMO4
EVEXLMO4
GoPubMedLMO4
iHOPLMO4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:13:03 CET 2017

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