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LMO7 (LIM domain 7)

Identity

Alias_namesFBXO20
LIM domain only 7
Alias_symbol (synonym)FBX20
KIAA0858
Other aliasLMO7b
LOMP
HGNC (Hugo) LMO7
LocusID (NCBI) 4008
Atlas_Id 52473
Location 13q22.2  [Link to chromosome band 13q22]
Location_base_pair Starts at 75636288 and ends at 75859871 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HNRNPA2B1 (7p15.2) / LMO7 (13q22.2)LMO7 (13q22.2) / HLTF (3q24)LMO7 (13q22.2) / MED4 (13q14.2)
LMO7 (13q22.2) / MUC4 (3q29)LMO7 (13q22.2) / TGFBI (5q31.1)LMO7 (13q22.2) / UCHL3 (13q22.2)
ZNF718 (4p16.3) / LMO7 (13q22.2)LMO7 13q22.2 / MED4 13q14.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LMO7   6646
Cards
Entrez_Gene (NCBI)LMO7  4008  LIM domain 7
AliasesFBX20; FBXO20; LMO7b; LOMP
GeneCards (Weizmann)LMO7
Ensembl hg19 (Hinxton)ENSG00000136153 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136153 [Gene_View]  chr13:75636288-75859871 [Contig_View]  LMO7 [Vega]
ICGC DataPortalENSG00000136153
TCGA cBioPortalLMO7
AceView (NCBI)LMO7
Genatlas (Paris)LMO7
WikiGenes4008
SOURCE (Princeton)LMO7
Genetics Home Reference (NIH)LMO7
Genomic and cartography
GoldenPath hg38 (UCSC)LMO7  -     chr13:75636288-75859871 +  13q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LMO7  -     13q22.2   [Description]    (hg19-Feb_2009)
EnsemblLMO7 - 13q22.2 [CytoView hg19]  LMO7 - 13q22.2 [CytoView hg38]
Mapping of homologs : NCBILMO7 [Mapview hg19]  LMO7 [Mapview hg38]
OMIM604362   
Gene and transcription
Genbank (Entrez)AA777749 AB020665 AF144237 AF174600 AF330045
RefSeq transcript (Entrez)NM_001306080 NM_001330583 NM_005358 NM_015842 NM_015843
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LMO7
Cluster EST : UnigeneHs.207631 [ NCBI ]
CGAP (NCI)Hs.207631
Alternative Splicing GalleryENSG00000136153
Gene ExpressionLMO7 [ NCBI-GEO ]   LMO7 [ EBI - ARRAY_EXPRESS ]   LMO7 [ SEEK ]   LMO7 [ MEM ]
Gene Expression Viewer (FireBrowse)LMO7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4008
GTEX Portal (Tissue expression)LMO7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWI1
Splice isoforms : SwissVarQ8WWI1
PhosPhoSitePlusQ8WWI1
Domaine pattern : Prosite (Expaxy)CH (PS50021)    LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)    PDZ (PS50106)   
Domains : Interpro (EBI)CH-domain    DUF4757    LMO-7    PDZ    SM22_calponin    Znf_LIM   
Domain families : Pfam (Sanger)CH (PF00307)    DUF4757 (PF15949)    LIM (PF00412)    PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00307    pfam15949    pfam00412    pfam00595   
Domain families : Smart (EMBL)CH (SM00033)  LIM (SM00132)  PDZ (SM00228)  
Conserved Domain (NCBI)LMO7
DMDM Disease mutations4008
Blocks (Seattle)LMO7
PDB (SRS)2EAQ   
PDB (PDBSum)2EAQ   
PDB (IMB)2EAQ   
PDB (RSDB)2EAQ   
Structural Biology KnowledgeBase2EAQ   
SCOP (Structural Classification of Proteins)2EAQ   
CATH (Classification of proteins structures)2EAQ   
SuperfamilyQ8WWI1
Human Protein AtlasENSG00000136153
Peptide AtlasQ8WWI1
HPRD05078
IPIIPI00409590   IPI00409591   IPI00291802   IPI00409593   IPI01026383   IPI01008952   IPI00641430   IPI00985430   IPI00976913   IPI00552510   IPI00977410   IPI00982301   IPI00975688   IPI00981656   IPI00978433   IPI00978951   IPI00976365   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWI1
IntAct (EBI)Q8WWI1
FunCoupENSG00000136153
BioGRIDLMO7
STRING (EMBL)LMO7
ZODIACLMO7
Ontologies - Pathways
QuickGOQ8WWI1
Ontology : AmiGOubiquitin ligase complex  protein polyubiquitination  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  nucleus  cytoplasm  cytosol  focal adhesion  zinc ion binding  protein ubiquitination  regulation of signaling  regulation of cell adhesion  
Ontology : EGO-EBIubiquitin ligase complex  protein polyubiquitination  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  nucleus  cytoplasm  cytosol  focal adhesion  zinc ion binding  protein ubiquitination  regulation of signaling  regulation of cell adhesion  
Pathways : KEGGAdherens junction   
NDEx NetworkLMO7
Atlas of Cancer Signalling NetworkLMO7
Wikipedia pathwaysLMO7
Orthology - Evolution
OrthoDB4008
GeneTree (enSembl)ENSG00000136153
Phylogenetic Trees/Animal Genes : TreeFamLMO7
HOVERGENQ8WWI1
HOGENOMQ8WWI1
Homologs : HomoloGeneLMO7
Homology/Alignments : Family Browser (UCSC)LMO7
Gene fusions - Rearrangements
Fusion : MitelmanLMO7/MED4 [13q22.2/13q14.2]  
Fusion: TCGALMO7 13q22.2 MED4 13q14.2 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLMO7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LMO7
dbVarLMO7
ClinVarLMO7
1000_GenomesLMO7 
Exome Variant ServerLMO7
ExAC (Exome Aggregation Consortium)LMO7 (select the gene name)
Genetic variants : HAPMAP4008
Genomic Variants (DGV)LMO7 [DGVbeta]
DECIPHERLMO7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLMO7 
Mutations
ICGC Data PortalLMO7 
TCGA Data PortalLMO7 
Broad Tumor PortalLMO7
OASIS PortalLMO7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLMO7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLMO7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LMO7
DgiDB (Drug Gene Interaction Database)LMO7
DoCM (Curated mutations)LMO7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LMO7 (select a term)
intoGenLMO7
Cancer3DLMO7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604362   
Orphanet
MedgenLMO7
Genetic Testing Registry LMO7
NextProtQ8WWI1 [Medical]
TSGene4008
GENETestsLMO7
Target ValidationLMO7
Huge Navigator LMO7 [HugePedia]
snp3D : Map Gene to Disease4008
BioCentury BCIQLMO7
ClinGenLMO7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4008
Chemical/Pharm GKB GenePA30412
Clinical trialLMO7
Miscellaneous
canSAR (ICR)LMO7 (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLMO7
EVEXLMO7
GoPubMedLMO7
iHOPLMO7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:15:43 CEST 2017

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