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LMO7 (LIM domain 7)

Identity

Alias (NCBI)FBX20
FBXO20
LMO7b
LOMP
HGNC (Hugo) LMO7
HGNC Alias symbFBX20
KIAA0858
HGNC Alias nameF-box only protein 20
HGNC Previous nameFBXO20
HGNC Previous nameLIM domain only 7
LocusID (NCBI) 4008
Atlas_Id 52473
Location 13q22.2  [Link to chromosome band 13q22]
Location_base_pair Starts at 75760661 and ends at 75859871 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HNRNPA2B1 (7p15.2) / LMO7 (13q22.2)LMO7 (13q22.2) / HLTF (3q24)LMO7 (13q22.2) / MED4 (13q14.2)
LMO7 (13q22.2) / MUC4 (3q29)LMO7 (13q22.2) / TGFBI (5q31.1)LMO7 (13q22.2) / UCHL3 (13q22.2)
ZNF718 (4p16.3) / LMO7 (13q22.2)LMO7 13q22.2 / MED4 13q14.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LMO7   6646
Cards
Entrez_Gene (NCBI)LMO7    LIM domain 7
AliasesFBX20; FBXO20; LMO7b; LOMP
GeneCards (Weizmann)LMO7
Ensembl hg19 (Hinxton)ENSG00000136153 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136153 [Gene_View]  ENSG00000136153 [Sequence]  chr13:75760661-75859871 [Contig_View]  LMO7 [Vega]
ICGC DataPortalENSG00000136153
TCGA cBioPortalLMO7
AceView (NCBI)LMO7
Genatlas (Paris)LMO7
SOURCE (Princeton)LMO7
Genetics Home Reference (NIH)LMO7
Genomic and cartography
GoldenPath hg38 (UCSC)LMO7  -     chr13:75760661-75859871 +  13q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LMO7  -     13q22.2   [Description]    (hg19-Feb_2009)
GoldenPathLMO7 - 13q22.2 [CytoView hg19]  LMO7 - 13q22.2 [CytoView hg38]
ImmunoBaseENSG00000136153
genome Data Viewer NCBILMO7 [Mapview hg19]  
OMIM604362   
Gene and transcription
Genbank (Entrez)AA777749 AB020665 AF144237 AF174600 AF330045
RefSeq transcript (Entrez)NM_001306080 NM_001330583 NM_001366632 NM_001366633 NM_001366634 NM_001366636 NM_005358 NM_015842 NM_015843
Consensus coding sequences : CCDS (NCBI)LMO7
Alternative Splicing GalleryENSG00000136153
Gene ExpressionLMO7 [ NCBI-GEO ]   LMO7 [ EBI - ARRAY_EXPRESS ]   LMO7 [ SEEK ]   LMO7 [ MEM ]
Gene Expression Viewer (FireBrowse)LMO7 [ Firebrowse - Broad ]
GenevisibleExpression of LMO7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4008
GTEX Portal (Tissue expression)LMO7
Human Protein AtlasENSG00000136153-LMO7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWI1
PhosPhoSitePlusQ8WWI1
Domaine pattern : Prosite (Expaxy)CH (PS50021)    LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)    PDZ (PS50106)   
Domains : Interpro (EBI)CH-domain    CH_dom_sf    DUF4757    LMO-7    PDZ    PDZ_sf    SM22_calponin    Znf_LIM   
Domain families : Pfam (Sanger)CH (PF00307)    DUF4757 (PF15949)    LIM (PF00412)    PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00307    pfam15949    pfam00412    pfam00595   
Domain families : Smart (EMBL)CH (SM00033)  LIM (SM00132)  PDZ (SM00228)  
Conserved Domain (NCBI)LMO7
PDB (RSDB)2EAQ   
PDB Europe2EAQ   
PDB (PDBSum)2EAQ   
PDB (IMB)2EAQ   
Structural Biology KnowledgeBase2EAQ   
SCOP (Structural Classification of Proteins)2EAQ   
CATH (Classification of proteins structures)2EAQ   
SuperfamilyQ8WWI1
AlphaFold pdb e-kbQ8WWI1   
Human Protein Atlas [tissue]ENSG00000136153-LMO7 [tissue]
HPRD05078
Protein Interaction databases
DIP (DOE-UCLA)Q8WWI1
IntAct (EBI)Q8WWI1
BioGRIDLMO7
STRING (EMBL)LMO7
ZODIACLMO7
Ontologies - Pathways
QuickGOQ8WWI1
Ontology : AmiGOubiquitin ligase complex  protein polyubiquitination  ubiquitin-protein transferase activity  nucleus  nuclear envelope  cytoplasm  cytosol  focal adhesion  cell surface  apical plasma membrane  protein ubiquitination  regulation of signaling  regulation of cell adhesion  post-translational protein modification  positive regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIubiquitin ligase complex  protein polyubiquitination  ubiquitin-protein transferase activity  nucleus  nuclear envelope  cytoplasm  cytosol  focal adhesion  cell surface  apical plasma membrane  protein ubiquitination  regulation of signaling  regulation of cell adhesion  post-translational protein modification  positive regulation of transcription by RNA polymerase II  metal ion binding  
Pathways : KEGGAdherens junction   
NDEx NetworkLMO7
Atlas of Cancer Signalling NetworkLMO7
Wikipedia pathwaysLMO7
Orthology - Evolution
OrthoDB4008
GeneTree (enSembl)ENSG00000136153
Phylogenetic Trees/Animal Genes : TreeFamLMO7
Homologs : HomoloGeneLMO7
Homology/Alignments : Family Browser (UCSC)LMO7
Gene fusions - Rearrangements
Fusion : MitelmanLMO7/MED4 [13q22.2/13q14.2]  
Fusion PortalLMO7 13q22.2 MED4 13q14.2 LUAD
Fusion : QuiverLMO7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLMO7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LMO7
dbVarLMO7
ClinVarLMO7
MonarchLMO7
1000_GenomesLMO7 
Exome Variant ServerLMO7
GNOMAD BrowserENSG00000136153
Varsome BrowserLMO7
Genomic Variants (DGV)LMO7 [DGVbeta]
DECIPHERLMO7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLMO7 
Mutations
ICGC Data PortalLMO7 
TCGA Data PortalLMO7 
Broad Tumor PortalLMO7
OASIS PortalLMO7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLMO7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLMO7
Mutations and Diseases : HGMDLMO7
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutasearch LMO7
DgiDB (Drug Gene Interaction Database)LMO7
DoCM (Curated mutations)LMO7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LMO7 (select a term)
Cancer3DLMO7(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604362   
Orphanet
DisGeNETLMO7
MedgenLMO7
Genetic Testing Registry LMO7
NextProtQ8WWI1 [Medical]
GENETestsLMO7
Target ValidationLMO7
Huge Navigator LMO7 [HugePedia]
ClinGenLMO7
Clinical trials, drugs, therapy
MyCancerGenomeLMO7
Protein Interactions : CTDLMO7
Pharm GKB GenePA30412
PharosQ8WWI1
Clinical trialLMO7
Miscellaneous
canSAR (ICR)LMO7
HarmonizomeLMO7
DataMed IndexLMO7
Probes
Litterature
PubMed81 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLMO7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Sep 15 22:21:23 CEST 2021

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