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LMO7DN (LMO7 downstream neighbor)

Identity

Alias_namesC13orf45
chromosome 13 open reading frame 45
Other alias
HGNC (Hugo) LMO7DN
LocusID (NCBI) 729420
Atlas_Id 66145
Location 13q22.2  [Link to chromosome band 13q22]
Location_base_pair Starts at 75871038 and ends at 75883812 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LMO7DN   44370
Cards
Entrez_Gene (NCBI)LMO7DN  729420  LMO7 downstream neighbor
AliasesC13orf45
GeneCards (Weizmann)LMO7DN
Ensembl hg19 (Hinxton)ENSG00000178734 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178734 [Gene_View]  chr13:75871038-75883812 [Contig_View]  LMO7DN [Vega]
ICGC DataPortalENSG00000178734
TCGA cBioPortalLMO7DN
AceView (NCBI)LMO7DN
Genatlas (Paris)LMO7DN
WikiGenes729420
SOURCE (Princeton)LMO7DN
Genetics Home Reference (NIH)LMO7DN
Genomic and cartography
GoldenPath hg38 (UCSC)LMO7DN  -     chr13:75871038-75883812 +  13q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LMO7DN  -     13q22.2   [Description]    (hg19-Feb_2009)
EnsemblLMO7DN - 13q22.2 [CytoView hg19]  LMO7DN - 13q22.2 [CytoView hg38]
Mapping of homologs : NCBILMO7DN [Mapview hg19]  LMO7DN [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092698
RefSeq transcript (Entrez)NM_001257995
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LMO7DN
Cluster EST : UnigeneHs.586820 [ NCBI ]
CGAP (NCI)Hs.586820
Alternative Splicing GalleryENSG00000178734
Gene ExpressionLMO7DN [ NCBI-GEO ]   LMO7DN [ EBI - ARRAY_EXPRESS ]   LMO7DN [ SEEK ]   LMO7DN [ MEM ]
Gene Expression Viewer (FireBrowse)LMO7DN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729420
GTEX Portal (Tissue expression)LMO7DN
Human Protein AtlasENSG00000178734-LMO7DN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtF2Z398   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtF2Z398  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProF2Z398
Splice isoforms : SwissVarF2Z398
PhosPhoSitePlusF2Z398
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LMO7DN
DMDM Disease mutations729420
Blocks (Seattle)LMO7DN
SuperfamilyF2Z398
Human Protein Atlas [tissue]ENSG00000178734-LMO7DN [tissue]
Peptide AtlasF2Z398
IPIIPI00744482   
Protein Interaction databases
DIP (DOE-UCLA)F2Z398
IntAct (EBI)F2Z398
FunCoupENSG00000178734
BioGRIDLMO7DN
STRING (EMBL)LMO7DN
ZODIACLMO7DN
Ontologies - Pathways
QuickGOF2Z398
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLMO7DN
Atlas of Cancer Signalling NetworkLMO7DN
Wikipedia pathwaysLMO7DN
Orthology - Evolution
OrthoDB729420
GeneTree (enSembl)ENSG00000178734
Phylogenetic Trees/Animal Genes : TreeFamLMO7DN
HOVERGENF2Z398
HOGENOMF2Z398
Homologs : HomoloGeneLMO7DN
Homology/Alignments : Family Browser (UCSC)LMO7DN
Gene fusions - Rearrangements
Tumor Fusion PortalLMO7DN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLMO7DN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LMO7DN
dbVarLMO7DN
ClinVarLMO7DN
1000_GenomesLMO7DN 
Exome Variant ServerLMO7DN
ExAC (Exome Aggregation Consortium)ENSG00000178734
GNOMAD BrowserENSG00000178734
Genetic variants : HAPMAP729420
Genomic Variants (DGV)LMO7DN [DGVbeta]
DECIPHERLMO7DN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLMO7DN 
Mutations
ICGC Data PortalLMO7DN 
TCGA Data PortalLMO7DN 
Broad Tumor PortalLMO7DN
OASIS PortalLMO7DN [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLMO7DN
BioMutasearch LMO7DN
DgiDB (Drug Gene Interaction Database)LMO7DN
DoCM (Curated mutations)LMO7DN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LMO7DN (select a term)
intoGenLMO7DN
Cancer3DLMO7DN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLMO7DN
MedgenLMO7DN
Genetic Testing Registry LMO7DN
NextProtF2Z398 [Medical]
TSGene729420
GENETestsLMO7DN
Target ValidationLMO7DN
Huge Navigator LMO7DN [HugePedia]
snp3D : Map Gene to Disease729420
BioCentury BCIQLMO7DN
ClinGenLMO7DN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729420
Chemical/Pharm GKB GenePA166049122
Clinical trialLMO7DN
Miscellaneous
canSAR (ICR)LMO7DN (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLMO7DN
EVEXLMO7DN
GoPubMedLMO7DN
iHOPLMO7DN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:28:33 CET 2017

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