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LMOD1 (leiomodin 1)

Identity

Alias_namesleiomodin 1 (smooth muscle)
Alias_symbol (synonym)64kD
D1
1D
Other aliasSM-LMOD
SMLMOD
HGNC (Hugo) LMOD1
LocusID (NCBI) 25802
Atlas_Id 55867
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 201865584 and ends at 201915716 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LMOD1 (1q32.1) / NPNT (4q24)LMOD1 (1q32.1) / PAPPA (9q33.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LMOD1   6647
Cards
Entrez_Gene (NCBI)LMOD1  25802  leiomodin 1
Aliases1D; 64kD; D1; SM-LMOD; 
SMLMOD
GeneCards (Weizmann)LMOD1
Ensembl hg19 (Hinxton)ENSG00000163431 [Gene_View]  chr1:201865584-201915716 [Contig_View]  LMOD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163431 [Gene_View]  chr1:201865584-201915716 [Contig_View]  LMOD1 [Vega]
ICGC DataPortalENSG00000163431
TCGA cBioPortalLMOD1
AceView (NCBI)LMOD1
Genatlas (Paris)LMOD1
WikiGenes25802
SOURCE (Princeton)LMOD1
Genetics Home Reference (NIH)LMOD1
Genomic and cartography
GoldenPath hg19 (UCSC)LMOD1  -     chr1:201865584-201915716 -  1q32.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LMOD1  -     1q32.1   [Description]    (hg38-Dec_2013)
EnsemblLMOD1 - 1q32.1 [CytoView hg19]  LMOD1 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBILMOD1 [Mapview hg19]  LMOD1 [Mapview hg38]
OMIM602715   
Gene and transcription
Genbank (Entrez)AK126474 AK295824 AK304700 AK304852 AK311740
RefSeq transcript (Entrez)NM_012134
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LMOD1
Cluster EST : UnigeneHs.519075 [ NCBI ]
CGAP (NCI)Hs.519075
Alternative Splicing GalleryENSG00000163431
Gene ExpressionLMOD1 [ NCBI-GEO ]   LMOD1 [ EBI - ARRAY_EXPRESS ]   LMOD1 [ SEEK ]   LMOD1 [ MEM ]
Gene Expression Viewer (FireBrowse)LMOD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25802
GTEX Portal (Tissue expression)LMOD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP29536   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP29536  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP29536
Splice isoforms : SwissVarP29536
PhosPhoSitePlusP29536
Domaine pattern : Prosite (Expaxy)WH2 (PS51082)   
Domains : Interpro (EBI)L_dom-like    LMOD1    TMOD    WH2_dom   
Domain families : Pfam (Sanger)Tropomodulin (PF03250)    WH2 (PF02205)   
Domain families : Pfam (NCBI)pfam03250    pfam02205   
Domain families : Smart (EMBL)WH2 (SM00246)  
Conserved Domain (NCBI)LMOD1
DMDM Disease mutations25802
Blocks (Seattle)LMOD1
PDB (SRS)4Z79    4Z8G    4Z94   
PDB (PDBSum)4Z79    4Z8G    4Z94   
PDB (IMB)4Z79    4Z8G    4Z94   
PDB (RSDB)4Z79    4Z8G    4Z94   
Structural Biology KnowledgeBase4Z79    4Z8G    4Z94   
SCOP (Structural Classification of Proteins)4Z79    4Z8G    4Z94   
CATH (Classification of proteins structures)4Z79    4Z8G    4Z94   
SuperfamilyP29536
Human Protein AtlasENSG00000163431
Peptide AtlasP29536
HPRD04093
IPIIPI00414008   IPI00872593   IPI00909194   IPI00909104   IPI00844008   IPI00984687   
Protein Interaction databases
DIP (DOE-UCLA)P29536
IntAct (EBI)P29536
FunCoupENSG00000163431
BioGRIDLMOD1
STRING (EMBL)LMOD1
ZODIACLMOD1
Ontologies - Pathways
QuickGOP29536
Ontology : AmiGOactin binding  tropomyosin binding  cytoplasm  cytosol  striated muscle thin filament  actin filament  muscle contraction  muscle contraction  actin filament organization  membrane  myofibril  sarcomere  myofibril assembly  positive regulation of actin filament polymerization  actin nucleation  pointed-end actin filament capping  
Ontology : EGO-EBIactin binding  tropomyosin binding  cytoplasm  cytosol  striated muscle thin filament  actin filament  muscle contraction  muscle contraction  actin filament organization  membrane  myofibril  sarcomere  myofibril assembly  positive regulation of actin filament polymerization  actin nucleation  pointed-end actin filament capping  
NDEx NetworkLMOD1
Atlas of Cancer Signalling NetworkLMOD1
Wikipedia pathwaysLMOD1
Orthology - Evolution
OrthoDB25802
GeneTree (enSembl)ENSG00000163431
Phylogenetic Trees/Animal Genes : TreeFamLMOD1
HOVERGENP29536
HOGENOMP29536
Homologs : HomoloGeneLMOD1
Homology/Alignments : Family Browser (UCSC)LMOD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLMOD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LMOD1
dbVarLMOD1
ClinVarLMOD1
1000_GenomesLMOD1 
Exome Variant ServerLMOD1
ExAC (Exome Aggregation Consortium)LMOD1 (select the gene name)
Genetic variants : HAPMAP25802
Genomic Variants (DGV)LMOD1 [DGVbeta]
DECIPHER (Syndromes)1:201865584-201915716  ENSG00000163431
CONAN: Copy Number AnalysisLMOD1 
Mutations
ICGC Data PortalLMOD1 
TCGA Data PortalLMOD1 
Broad Tumor PortalLMOD1
OASIS PortalLMOD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLMOD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLMOD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LMOD1
DgiDB (Drug Gene Interaction Database)LMOD1
DoCM (Curated mutations)LMOD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LMOD1 (select a term)
intoGenLMOD1
Cancer3DLMOD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602715   
Orphanet
MedgenLMOD1
Genetic Testing Registry LMOD1
NextProtP29536 [Medical]
TSGene25802
GENETestsLMOD1
Huge Navigator LMOD1 [HugePedia]
snp3D : Map Gene to Disease25802
BioCentury BCIQLMOD1
ClinGenLMOD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25802
Chemical/Pharm GKB GenePA30413
Clinical trialLMOD1
Miscellaneous
canSAR (ICR)LMOD1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLMOD1
EVEXLMOD1
GoPubMedLMOD1
iHOPLMOD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:07:15 CEST 2017

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