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LMOD2 (leiomodin 2)

Identity

Alias_namesleiomodin 2 (cardiac)
Other aliasC-LMOD
CLMOD
HGNC (Hugo) LMOD2
LocusID (NCBI) 442721
Atlas_Id 55840
Location 7q31.32  [Link to chromosome band 7q31]
Location_base_pair Starts at 123655807 and ends at 123664287 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CADPS2 (7q31.32) / LMOD2 (7q31.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LMOD2   6648
Cards
Entrez_Gene (NCBI)LMOD2  442721  leiomodin 2
AliasesC-LMOD; CLMOD
GeneCards (Weizmann)LMOD2
Ensembl hg19 (Hinxton)ENSG00000170807 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170807 [Gene_View]  chr7:123655807-123664287 [Contig_View]  LMOD2 [Vega]
ICGC DataPortalENSG00000170807
TCGA cBioPortalLMOD2
AceView (NCBI)LMOD2
Genatlas (Paris)LMOD2
WikiGenes442721
SOURCE (Princeton)LMOD2
Genetics Home Reference (NIH)LMOD2
Genomic and cartography
GoldenPath hg38 (UCSC)LMOD2  -     chr7:123655807-123664287 +  7q31.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LMOD2  -     7q31.32   [Description]    (hg19-Feb_2009)
EnsemblLMOD2 - 7q31.32 [CytoView hg19]  LMOD2 - 7q31.32 [CytoView hg38]
Mapping of homologs : NCBILMOD2 [Mapview hg19]  LMOD2 [Mapview hg38]
OMIM608006   
Gene and transcription
Genbank (Entrez)AA747115 AK299389 AK299434 AK300698 AK309496
RefSeq transcript (Entrez)NM_207163
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LMOD2
Cluster EST : UnigeneHs.592260 [ NCBI ]
CGAP (NCI)Hs.592260
Alternative Splicing GalleryENSG00000170807
Gene ExpressionLMOD2 [ NCBI-GEO ]   LMOD2 [ EBI - ARRAY_EXPRESS ]   LMOD2 [ SEEK ]   LMOD2 [ MEM ]
Gene Expression Viewer (FireBrowse)LMOD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442721
GTEX Portal (Tissue expression)LMOD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P5Q4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P5Q4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P5Q4
Splice isoforms : SwissVarQ6P5Q4
PhosPhoSitePlusQ6P5Q4
Domaine pattern : Prosite (Expaxy)WH2 (PS51082)   
Domains : Interpro (EBI)L_dom-like    LMOD2    TMOD    WH2_dom   
Domain families : Pfam (Sanger)Tropomodulin (PF03250)   
Domain families : Pfam (NCBI)pfam03250   
Conserved Domain (NCBI)LMOD2
DMDM Disease mutations442721
Blocks (Seattle)LMOD2
PDB (SRS)4RWT   
PDB (PDBSum)4RWT   
PDB (IMB)4RWT   
PDB (RSDB)4RWT   
Structural Biology KnowledgeBase4RWT   
SCOP (Structural Classification of Proteins)4RWT   
CATH (Classification of proteins structures)4RWT   
SuperfamilyQ6P5Q4
Human Protein AtlasENSG00000170807
Peptide AtlasQ6P5Q4
IPIIPI00852965   IPI00873545   IPI00844113   IPI01010170   IPI00943249   IPI00976241   IPI00946672   
Protein Interaction databases
DIP (DOE-UCLA)Q6P5Q4
IntAct (EBI)Q6P5Q4
FunCoupENSG00000170807
BioGRIDLMOD2
STRING (EMBL)LMOD2
ZODIACLMOD2
Ontologies - Pathways
QuickGOQ6P5Q4
Ontology : AmiGOactin binding  tropomyosin binding  actin filament  myofibril  sarcomere  actin filament polymerization  positive regulation of actin filament polymerization  M band  actin nucleation  sarcomere organization  pointed-end actin filament capping  
Ontology : EGO-EBIactin binding  tropomyosin binding  actin filament  myofibril  sarcomere  actin filament polymerization  positive regulation of actin filament polymerization  M band  actin nucleation  sarcomere organization  pointed-end actin filament capping  
NDEx NetworkLMOD2
Atlas of Cancer Signalling NetworkLMOD2
Wikipedia pathwaysLMOD2
Orthology - Evolution
OrthoDB442721
GeneTree (enSembl)ENSG00000170807
Phylogenetic Trees/Animal Genes : TreeFamLMOD2
HOVERGENQ6P5Q4
HOGENOMQ6P5Q4
Homologs : HomoloGeneLMOD2
Homology/Alignments : Family Browser (UCSC)LMOD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLMOD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LMOD2
dbVarLMOD2
ClinVarLMOD2
1000_GenomesLMOD2 
Exome Variant ServerLMOD2
ExAC (Exome Aggregation Consortium)LMOD2 (select the gene name)
Genetic variants : HAPMAP442721
Genomic Variants (DGV)LMOD2 [DGVbeta]
DECIPHERLMOD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLMOD2 
Mutations
ICGC Data PortalLMOD2 
TCGA Data PortalLMOD2 
Broad Tumor PortalLMOD2
OASIS PortalLMOD2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLMOD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LMOD2
DgiDB (Drug Gene Interaction Database)LMOD2
DoCM (Curated mutations)LMOD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LMOD2 (select a term)
intoGenLMOD2
Cancer3DLMOD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608006   
Orphanet
MedgenLMOD2
Genetic Testing Registry LMOD2
NextProtQ6P5Q4 [Medical]
TSGene442721
GENETestsLMOD2
Target ValidationLMOD2
Huge Navigator LMOD2 [HugePedia]
snp3D : Map Gene to Disease442721
BioCentury BCIQLMOD2
ClinGenLMOD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD442721
Chemical/Pharm GKB GenePA30414
Clinical trialLMOD2
Miscellaneous
canSAR (ICR)LMOD2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLMOD2
EVEXLMOD2
GoPubMedLMOD2
iHOPLMOD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:15:43 CEST 2017

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