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LMOD3 (leiomodin 3)

Identity

Alias_namesleiomodin 3 (fetal)
Other aliasNEM10
HGNC (Hugo) LMOD3
LocusID (NCBI) 56203
Atlas_Id 55144
Location 3p14.1  [Link to chromosome band 3p14]
Location_base_pair Starts at 69157823 and ends at 69171746 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LMOD3   6649
Cards
Entrez_Gene (NCBI)LMOD3  56203  leiomodin 3
AliasesNEM10
GeneCards (Weizmann)LMOD3
Ensembl hg19 (Hinxton)ENSG00000163380 [Gene_View]  chr3:69157823-69171746 [Contig_View]  LMOD3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163380 [Gene_View]  chr3:69157823-69171746 [Contig_View]  LMOD3 [Vega]
ICGC DataPortalENSG00000163380
TCGA cBioPortalLMOD3
AceView (NCBI)LMOD3
Genatlas (Paris)LMOD3
WikiGenes56203
SOURCE (Princeton)LMOD3
Genetics Home Reference (NIH)LMOD3
Genomic and cartography
GoldenPath hg19 (UCSC)LMOD3  -     chr3:69157823-69171746 -  3p14.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LMOD3  -     3p14.1   [Description]    (hg38-Dec_2013)
EnsemblLMOD3 - 3p14.1 [CytoView hg19]  LMOD3 - 3p14.1 [CytoView hg38]
Mapping of homologs : NCBILMOD3 [Mapview hg19]  LMOD3 [Mapview hg38]
OMIM616112   616165   
Gene and transcription
Genbank (Entrez)AI014510 AK057852 AK096900 AK300096 AL832033
RefSeq transcript (Entrez)NM_001304418 NM_198271
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_041828 NT_022517 NW_004929310
Consensus coding sequences : CCDS (NCBI)LMOD3
Cluster EST : UnigeneHs.350621 [ NCBI ]
CGAP (NCI)Hs.350621
Alternative Splicing GalleryENSG00000163380
Gene ExpressionLMOD3 [ NCBI-GEO ]   LMOD3 [ EBI - ARRAY_EXPRESS ]   LMOD3 [ SEEK ]   LMOD3 [ MEM ]
Gene Expression Viewer (FireBrowse)LMOD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56203
GTEX Portal (Tissue expression)LMOD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0VAK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0VAK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0VAK6
Splice isoforms : SwissVarQ0VAK6
PhosPhoSitePlusQ0VAK6
Domains : Interpro (EBI)L_dom-like    LMOD3    TMOD   
Domain families : Pfam (Sanger)Tropomodulin (PF03250)   
Domain families : Pfam (NCBI)pfam03250   
Conserved Domain (NCBI)LMOD3
DMDM Disease mutations56203
Blocks (Seattle)LMOD3
SuperfamilyQ0VAK6
Human Protein AtlasENSG00000163380
Peptide AtlasQ0VAK6
HPRD13993
IPIIPI00792431   IPI00743820   
Protein Interaction databases
DIP (DOE-UCLA)Q0VAK6
IntAct (EBI)Q0VAK6
FunCoupENSG00000163380
BioGRIDLMOD3
STRING (EMBL)LMOD3
ZODIACLMOD3
Ontologies - Pathways
QuickGOQ0VAK6
Ontology : AmiGOactin monomer binding  tropomyosin binding  striated muscle thin filament  muscle contraction  actin filament organization  myofibril assembly  M band  pointed-end actin filament capping  
Ontology : EGO-EBIactin monomer binding  tropomyosin binding  striated muscle thin filament  muscle contraction  actin filament organization  myofibril assembly  M band  pointed-end actin filament capping  
NDEx NetworkLMOD3
Atlas of Cancer Signalling NetworkLMOD3
Wikipedia pathwaysLMOD3
Orthology - Evolution
OrthoDB56203
GeneTree (enSembl)ENSG00000163380
Phylogenetic Trees/Animal Genes : TreeFamLMOD3
HOVERGENQ0VAK6
HOGENOMQ0VAK6
Homologs : HomoloGeneLMOD3
Homology/Alignments : Family Browser (UCSC)LMOD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLMOD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LMOD3
dbVarLMOD3
ClinVarLMOD3
1000_GenomesLMOD3 
Exome Variant ServerLMOD3
ExAC (Exome Aggregation Consortium)LMOD3 (select the gene name)
Genetic variants : HAPMAP56203
Genomic Variants (DGV)LMOD3 [DGVbeta]
DECIPHER (Syndromes)3:69157823-69171746  ENSG00000163380
CONAN: Copy Number AnalysisLMOD3 
Mutations
ICGC Data PortalLMOD3 
TCGA Data PortalLMOD3 
Broad Tumor PortalLMOD3
OASIS PortalLMOD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLMOD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLMOD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LMOD3
DgiDB (Drug Gene Interaction Database)LMOD3
DoCM (Curated mutations)LMOD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LMOD3 (select a term)
intoGenLMOD3
Cancer3DLMOD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616112    616165   
Orphanet17906    17908   
MedgenLMOD3
Genetic Testing Registry LMOD3
NextProtQ0VAK6 [Medical]
TSGene56203
GENETestsLMOD3
Huge Navigator LMOD3 [HugePedia]
snp3D : Map Gene to Disease56203
BioCentury BCIQLMOD3
ClinGenLMOD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56203
Chemical/Pharm GKB GenePA30415
Clinical trialLMOD3
Miscellaneous
canSAR (ICR)LMOD3 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLMOD3
EVEXLMOD3
GoPubMedLMOD3
iHOPLMOD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:07:15 CEST 2017

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