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LMTK3 (lemur tyrosine kinase 3)

Identity

Alias (NCBI)LMR3
PPP1R101
TYKLM3
HGNC (Hugo) LMTK3
HGNC Alias symbKIAA1883
LMR3
TYKLM3
PPP1R101
HGNC Alias nameprotein phosphatase 1, regulatory subunit 101
LocusID (NCBI) 114783
Atlas_Id 43602
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48485271 and ends at 48513189 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LMTK3 (19q13.33) / LMTK3 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)LMTK3   19295
Cards
Entrez_Gene (NCBI)LMTK3    lemur tyrosine kinase 3
AliasesLMR3; PPP1R101; TYKLM3
GeneCards (Weizmann)LMTK3
Ensembl hg19 (Hinxton)ENSG00000142235 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142235 [Gene_View]  ENSG00000142235 [Sequence]  chr19:48485271-48513189 [Contig_View]  LMTK3 [Vega]
ICGC DataPortalENSG00000142235
TCGA cBioPortalLMTK3
AceView (NCBI)LMTK3
Genatlas (Paris)LMTK3
SOURCE (Princeton)LMTK3
Genetics Home Reference (NIH)LMTK3
Genomic and cartography
GoldenPath hg38 (UCSC)LMTK3  -     chr19:48485271-48513189 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LMTK3  -     19q13.33   [Description]    (hg19-Feb_2009)
GoldenPathLMTK3 - 19q13.33 [CytoView hg19]  LMTK3 - 19q13.33 [CytoView hg38]
ImmunoBaseENSG00000142235
Genome Data Viewer NCBILMTK3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB067470 BC036690
RefSeq transcript (Entrez)NM_001080434 NM_001388485
Consensus coding sequences : CCDS (NCBI)LMTK3
Gene ExpressionLMTK3 [ NCBI-GEO ]   LMTK3 [ EBI - ARRAY_EXPRESS ]   LMTK3 [ SEEK ]   LMTK3 [ MEM ]
Gene Expression Viewer (FireBrowse)LMTK3 [ Firebrowse - Broad ]
GenevisibleExpression of LMTK3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114783
GTEX Portal (Tissue expression)LMTK3
Human Protein AtlasENSG00000142235-LMTK3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96Q04   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96Q04  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96Q04
PhosPhoSitePlusQ96Q04
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_TYR (PS00109)   
Domains : Interpro (EBI)Kinase-like_dom_sf    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser-Thr/Tyr_kinase_cat_dom    Tyr_kinase_AS   
Domain families : Pfam (Sanger)PK_Tyr_Ser-Thr (PF07714)   
Domain families : Pfam (NCBI)pfam07714   
Conserved Domain (NCBI)LMTK3
SuperfamilyQ96Q04
AlphaFold pdb e-kbQ96Q04   
Human Protein Atlas [tissue]ENSG00000142235-LMTK3 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q96Q04
IntAct (EBI)Q96Q04
BioGRIDLMTK3
STRING (EMBL)LMTK3
ZODIACLMTK3
Ontologies - Pathways
QuickGOQ96Q04
Ontology : AmiGOGolgi membrane  molecular_function  protein kinase activity  protein binding  ATP binding  cellular_component  protein phosphorylation  integral component of membrane  axon  dendrite  metal ion binding  protein serine kinase activity  protein threonine kinase activity  
Ontology : EGO-EBIGolgi membrane  molecular_function  protein kinase activity  protein binding  ATP binding  cellular_component  protein phosphorylation  integral component of membrane  axon  dendrite  metal ion binding  protein serine kinase activity  protein threonine kinase activity  
NDEx NetworkLMTK3
Atlas of Cancer Signalling NetworkLMTK3
Wikipedia pathwaysLMTK3
Orthology - Evolution
OrthoDB114783
GeneTree (enSembl)ENSG00000142235
Phylogenetic Trees/Animal Genes : TreeFamLMTK3
Homologs : HomoloGeneLMTK3
Homology/Alignments : Family Browser (UCSC)LMTK3
Gene fusions - Rearrangements
Fusion : QuiverLMTK3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLMTK3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LMTK3
dbVarLMTK3
ClinVarLMTK3
MonarchLMTK3
1000_GenomesLMTK3 
Exome Variant ServerLMTK3
GNOMAD BrowserENSG00000142235
Varsome BrowserLMTK3
ACMGLMTK3 variants
VarityQ96Q04
Genomic Variants (DGV)LMTK3 [DGVbeta]
DECIPHERLMTK3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLMTK3 
Mutations
ICGC Data PortalLMTK3 
TCGA Data PortalLMTK3 
Broad Tumor PortalLMTK3
OASIS PortalLMTK3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLMTK3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLMTK3
Mutations and Diseases : HGMDLMTK3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaLMTK3
DgiDB (Drug Gene Interaction Database)LMTK3
DoCM (Curated mutations)LMTK3
CIViC (Clinical Interpretations of Variants in Cancer)LMTK3
Cancer3DLMTK3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLMTK3
MedgenLMTK3
Genetic Testing Registry LMTK3
NextProtQ96Q04 [Medical]
GENETestsLMTK3
Target ValidationLMTK3
Huge Navigator LMTK3 [HugePedia]
ClinGenLMTK3
Clinical trials, drugs, therapy
MyCancerGenomeLMTK3
Protein Interactions : CTDLMTK3
Pharm GKB GenePA134951789
PharosQ96Q04
Clinical trialLMTK3
Miscellaneous
canSAR (ICR)LMTK3
HarmonizomeLMTK3
DataMed IndexLMTK3
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLMTK3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:16:29 CEST 2021

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