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LNCNEF (lncRNA neighboring enhancer of FOXA2)

Identity

Alias (NCBI)LINC01384
lncRNA-NEF
HGNC (Hugo) LNCNEF
LocusID (NCBI) 101929685
Atlas_Id 65968
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 22587522 and ends at 22607517 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LNCNEF   50656
Cards
Entrez_Gene (NCBI)LNCNEF  101929685  lncRNA neighboring enhancer of FOXA2
AliasesLINC01384; lncRNA-NEF
GeneCards (Weizmann)LNCNEF
Ensembl hg19 (Hinxton)ENSG00000237396 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237396 [Gene_View]  ENSG00000237396 [Sequence]  chr20:22587522-22607517 [Contig_View]  LNCNEF [Vega]
ICGC DataPortalENSG00000237396
TCGA cBioPortalLNCNEF
AceView (NCBI)LNCNEF
Genatlas (Paris)LNCNEF
WikiGenes101929685
SOURCE (Princeton)LNCNEF
Genetics Home Reference (NIH)LNCNEF
Genomic and cartography
GoldenPath hg38 (UCSC)LNCNEF  -     chr20:22587522-22607517 -  20p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LNCNEF  -     20p11.21   [Description]    (hg19-Feb_2009)
GoldenPathLNCNEF - 20p11.21 [CytoView hg19]  LNCNEF - 20p11.21 [CytoView hg38]
ImmunoBaseENSG00000237396
genome Data Viewer NCBILNCNEF [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BQ447805
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LNCNEF
Alternative Splicing GalleryENSG00000237396
Gene ExpressionLNCNEF [ NCBI-GEO ]   LNCNEF [ EBI - ARRAY_EXPRESS ]   LNCNEF [ SEEK ]   LNCNEF [ MEM ]
Gene Expression Viewer (FireBrowse)LNCNEF [ Firebrowse - Broad ]
GenevisibleExpression of LNCNEF in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101929685
GTEX Portal (Tissue expression)LNCNEF
Human Protein AtlasENSG00000237396-LNCNEF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LNCNEF
DMDM Disease mutations101929685
Blocks (Seattle)LNCNEF
Human Protein Atlas [tissue]ENSG00000237396-LNCNEF [tissue]
Protein Interaction databases
FunCoupENSG00000237396
BioGRIDLNCNEF
STRING (EMBL)LNCNEF
ZODIACLNCNEF
Ontologies - Pathways
Huge Navigator LNCNEF [HugePedia]
snp3D : Map Gene to Disease101929685
BioCentury BCIQLNCNEF
ClinGenLNCNEF
Clinical trials, drugs, therapy
Protein Interactions : CTD101929685
Clinical trialLNCNEF
Miscellaneous
canSAR (ICR)LNCNEF (select the gene name)
HarmonizomeLNCNEF
DataMed IndexLNCNEF
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLNCNEF
EVEXLNCNEF
GoPubMedLNCNEF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:45:19 CEST 2020

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