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LNCSRLR (lncRNA sorafenib resistance in renal cell carcinoma associated)

Identity

Other aliaslncRNA-SRLR
HGNC (Hugo) LNCSRLR
LocusID (NCBI) 109729161
Atlas_Id 56851
Location 3q24  [Link to chromosome band 3q24]
Location_base_pair Starts at 146066344 and ends at 146069185 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LNCSRLR   52753
Cards
Entrez_Gene (NCBI)LNCSRLR  109729161  lncRNA sorafenib resistance in renal cell carcinoma associated
AliaseslncRNA-SRLR
GeneCards (Weizmann)LNCSRLR
Ensembl hg19 (Hinxton)ENSG00000240032 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240032 [Gene_View]  ENSG00000240032 [Sequence]  chr3:146066344-146069185 [Contig_View]  LNCSRLR [Vega]
ICGC DataPortalENSG00000240032
TCGA cBioPortalLNCSRLR
AceView (NCBI)LNCSRLR
Genatlas (Paris)LNCSRLR
WikiGenes109729161
SOURCE (Princeton)LNCSRLR
Genetics Home Reference (NIH)LNCSRLR
Genomic and cartography
GoldenPath hg38 (UCSC)LNCSRLR  -     chr3:146066344-146069185 -  3q24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LNCSRLR  -     3q24   [Description]    (hg19-Feb_2009)
EnsemblLNCSRLR - 3q24 [CytoView hg19]  LNCSRLR - 3q24 [CytoView hg38]
Mapping of homologs : NCBILNCSRLR [Mapview hg19]  LNCSRLR [Mapview hg38]
Gene and transcription
Genbank (Entrez)BU686275
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LNCSRLR
Alternative Splicing GalleryENSG00000240032
Gene ExpressionLNCSRLR [ NCBI-GEO ]   LNCSRLR [ EBI - ARRAY_EXPRESS ]   LNCSRLR [ SEEK ]   LNCSRLR [ MEM ]
Gene Expression Viewer (FireBrowse)LNCSRLR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)109729161
GTEX Portal (Tissue expression)LNCSRLR
Human Protein AtlasENSG00000240032-LNCSRLR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LNCSRLR
DMDM Disease mutations109729161
Blocks (Seattle)LNCSRLR
Human Protein Atlas [tissue]ENSG00000240032-LNCSRLR [tissue]
Protein Interaction databases
FunCoupENSG00000240032
BioGRIDLNCSRLR
STRING (EMBL)LNCSRLR
ZODIACLNCSRLR
Ontologies - Pathways
Huge Navigator LNCSRLR [HugePedia]
snp3D : Map Gene to Disease109729161
BioCentury BCIQLNCSRLR
ClinGenLNCSRLR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109729161
Clinical trialLNCSRLR
Miscellaneous
canSAR (ICR)LNCSRLR (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLNCSRLR
EVEXLNCSRLR
GoPubMedLNCSRLR
iHOPLNCSRLR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:17:01 CET 2018

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