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LNP1 (leukemia NUP98 fusion partner 1)

Identity

Alias_symbol (synonym)NP3
Other alias
HGNC (Hugo) LNP1
LocusID (NCBI) 348801
Atlas_Id 43089
Location 3q12.2  [Link to chromosome band 3q12]
Location_base_pair Starts at 100401193 and ends at 100456326 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NUP98 (11p15.4) / LNP1 (3q12.2)ZMYM5 (13q12.11) / LNP1 (3q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(3;11)(q12;p15) NUP98/LNP1


External links

Nomenclature
HGNC (Hugo)LNP1   28014
Cards
Entrez_Gene (NCBI)LNP1  348801  leukemia NUP98 fusion partner 1
AliasesNP3
GeneCards (Weizmann)LNP1
Ensembl hg19 (Hinxton)ENSG00000206535 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206535 [Gene_View]  chr3:100401193-100456326 [Contig_View]  LNP1 [Vega]
ICGC DataPortalENSG00000206535
TCGA cBioPortalLNP1
AceView (NCBI)LNP1
Genatlas (Paris)LNP1
WikiGenes348801
SOURCE (Princeton)LNP1
Genetics Home Reference (NIH)LNP1
Genomic and cartography
GoldenPath hg38 (UCSC)LNP1  -     chr3:100401193-100456326 +  3q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LNP1  -     3q12.2   [Description]    (hg19-Feb_2009)
EnsemblLNP1 - 3q12.2 [CytoView hg19]  LNP1 - 3q12.2 [CytoView hg38]
Mapping of homologs : NCBILNP1 [Mapview hg19]  LNP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056320 AW295433 BC040562 BC067886 BC126362
RefSeq transcript (Entrez)NM_001085451
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LNP1
Cluster EST : UnigeneHs.591294 [ NCBI ]
CGAP (NCI)Hs.591294
Alternative Splicing GalleryENSG00000206535
Gene ExpressionLNP1 [ NCBI-GEO ]   LNP1 [ EBI - ARRAY_EXPRESS ]   LNP1 [ SEEK ]   LNP1 [ MEM ]
Gene Expression Viewer (FireBrowse)LNP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348801
GTEX Portal (Tissue expression)LNP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1A4G5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1A4G5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1A4G5
Splice isoforms : SwissVarA1A4G5
PhosPhoSitePlusA1A4G5
Domains : Interpro (EBI)LNP1   
Domain families : Pfam (Sanger)LNP1 (PF15419)   
Domain families : Pfam (NCBI)pfam15419   
Conserved Domain (NCBI)LNP1
DMDM Disease mutations348801
Blocks (Seattle)LNP1
SuperfamilyA1A4G5
Human Protein AtlasENSG00000206535
Peptide AtlasA1A4G5
IPIIPI00402454   IPI00947411   IPI00947248   
Protein Interaction databases
DIP (DOE-UCLA)A1A4G5
IntAct (EBI)A1A4G5
FunCoupENSG00000206535
BioGRIDLNP1
STRING (EMBL)LNP1
ZODIACLNP1
Ontologies - Pathways
QuickGOA1A4G5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLNP1
Atlas of Cancer Signalling NetworkLNP1
Wikipedia pathwaysLNP1
Orthology - Evolution
OrthoDB348801
GeneTree (enSembl)ENSG00000206535
Phylogenetic Trees/Animal Genes : TreeFamLNP1
HOVERGENA1A4G5
HOGENOMA1A4G5
Homologs : HomoloGeneLNP1
Homology/Alignments : Family Browser (UCSC)LNP1
Gene fusions - Rearrangements
Fusion : MitelmanNUP98/LNP1 [11p15.4/3q12.2]  [t(3;11)(q12;p15)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLNP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LNP1
dbVarLNP1
ClinVarLNP1
1000_GenomesLNP1 
Exome Variant ServerLNP1
ExAC (Exome Aggregation Consortium)LNP1 (select the gene name)
Genetic variants : HAPMAP348801
Genomic Variants (DGV)LNP1 [DGVbeta]
DECIPHERLNP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLNP1 
Mutations
ICGC Data PortalLNP1 
TCGA Data PortalLNP1 
Broad Tumor PortalLNP1
OASIS PortalLNP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLNP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLNP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LNP1
DgiDB (Drug Gene Interaction Database)LNP1
DoCM (Curated mutations)LNP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LNP1 (select a term)
intoGenLNP1
Cancer3DLNP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLNP1
Genetic Testing Registry LNP1
NextProtA1A4G5 [Medical]
TSGene348801
GENETestsLNP1
Huge Navigator LNP1 [HugePedia]
snp3D : Map Gene to Disease348801
BioCentury BCIQLNP1
ClinGenLNP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348801
Chemical/Pharm GKB GenePA142671542
Clinical trialLNP1
Miscellaneous
canSAR (ICR)LNP1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLNP1
EVEXLNP1
GoPubMedLNP1
iHOPLNP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:22:47 CEST 2017

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