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LNPK (lunapark, ER junction formation factor)

Identity

Other aliasKIAA1715
LNP
LNP1
Ul
ulnaless
HGNC (Hugo) LNPK
LocusID (NCBI) 80856
Atlas_Id 78593
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 176788620 and ends at 176867073 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LNPK   21610
Cards
Entrez_Gene (NCBI)LNPK  80856  lunapark, ER junction formation factor
AliasesKIAA1715; LNP; LNP1; Ul; 
ulnaless
GeneCards (Weizmann)LNPK
Ensembl hg19 (Hinxton) [Gene_View]  chr2:176788620-176867073 [Contig_View]  LNPK [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:176788620-176867073 [Contig_View]  LNPK [Vega]
TCGA cBioPortalLNPK
AceView (NCBI)LNPK
Genatlas (Paris)LNPK
WikiGenes80856
SOURCE (Princeton)LNPK
Genetics Home Reference (NIH)LNPK
Genomic and cartography
GoldenPath hg19 (UCSC)LNPK  -     chr2:176788620-176867073 -  2q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LNPK  -     2q31.1   [Description]    (hg38-Dec_2013)
EnsemblLNPK - 2q31.1 [CytoView hg19]  LNPK - 2q31.1 [CytoView hg38]
Mapping of homologs : NCBILNPK [Mapview hg19]  LNPK [Mapview hg38]
OMIM610236   
Gene and transcription
Genbank (Entrez)AB051502 AK056532 AK096916 AK301947 AK302833
RefSeq transcript (Entrez)NM_001305008 NM_001305009 NM_001305010 NM_001305011 NM_030650
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LNPK
Cluster EST : UnigeneHs.209561 [ NCBI ]
CGAP (NCI)Hs.209561
Gene ExpressionLNPK [ NCBI-GEO ]   LNPK [ EBI - ARRAY_EXPRESS ]   LNPK [ SEEK ]   LNPK [ MEM ]
Gene Expression Viewer (FireBrowse)LNPK [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80856
GTEX Portal (Tissue expression)LNPK
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0E8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0E8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0E8
Splice isoforms : SwissVarQ9C0E8
PhosPhoSitePlusQ9C0E8
Domains : Interpro (EBI)Lunapark_dom   
Domain families : Pfam (Sanger)zinc_ribbon_10 (PF10058)   
Domain families : Pfam (NCBI)pfam10058   
Conserved Domain (NCBI)LNPK
DMDM Disease mutations80856
Blocks (Seattle)LNPK
SuperfamilyQ9C0E8
Peptide AtlasQ9C0E8
HPRD13886
IPIIPI00028369   IPI00785171   IPI00784901   IPI01014813   IPI00953712   IPI01010363   IPI00915851   IPI00977697   IPI00916121   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0E8
IntAct (EBI)Q9C0E8
BioGRIDLNPK
STRING (EMBL)LNPK
ZODIACLNPK
Ontologies - Pathways
QuickGOQ9C0E8
Ontology : AmiGOendoplasmic reticulum membrane  blood coagulation  integral component of membrane  regulation of chondrocyte differentiation  embryonic forelimb morphogenesis  embryonic digit morphogenesis  metal ion binding  limb development  endoplasmic reticulum tubular network  endoplasmic reticulum tubular network organization  
Ontology : EGO-EBIendoplasmic reticulum membrane  blood coagulation  integral component of membrane  regulation of chondrocyte differentiation  embryonic forelimb morphogenesis  embryonic digit morphogenesis  metal ion binding  limb development  endoplasmic reticulum tubular network  endoplasmic reticulum tubular network organization  
NDEx NetworkLNPK
Atlas of Cancer Signalling NetworkLNPK
Wikipedia pathwaysLNPK
Orthology - Evolution
OrthoDB80856
Phylogenetic Trees/Animal Genes : TreeFamLNPK
HOVERGENQ9C0E8
HOGENOMQ9C0E8
Homologs : HomoloGeneLNPK
Homology/Alignments : Family Browser (UCSC)LNPK
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLNPK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LNPK
dbVarLNPK
ClinVarLNPK
1000_GenomesLNPK 
Exome Variant ServerLNPK
ExAC (Exome Aggregation Consortium)LNPK (select the gene name)
Genetic variants : HAPMAP80856
Genomic Variants (DGV)LNPK [DGVbeta]
DECIPHER (Syndromes)2:176788620-176867073  
CONAN: Copy Number AnalysisLNPK 
Mutations
ICGC Data PortalLNPK 
TCGA Data PortalLNPK 
Broad Tumor PortalLNPK
OASIS PortalLNPK [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLNPK
BioMutasearch LNPK
DgiDB (Drug Gene Interaction Database)LNPK
DoCM (Curated mutations)LNPK (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LNPK (select a term)
intoGenLNPK
Cancer3DLNPK(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610236   
Orphanet
MedgenLNPK
Genetic Testing Registry LNPK
NextProtQ9C0E8 [Medical]
TSGene80856
GENETestsLNPK
Huge Navigator LNPK [HugePedia]
snp3D : Map Gene to Disease80856
BioCentury BCIQLNPK
ClinGenLNPK
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80856
Chemical/Pharm GKB GenePA134938939
Clinical trialLNPK
Miscellaneous
canSAR (ICR)LNPK (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLNPK
EVEXLNPK
GoPubMedLNPK
iHOPLNPK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:14:38 CET 2017

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