LNX2 (ligand of numb-protein X 2)

Identity

Other names	FLJ12933
	FLJ23932
	FLJ38000
	MGC46315
	PDZRN1
HGNC	LNX2
Location	13q12.2
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	LNX2   20421
Entrez_Gene	LNX2  222484  ligand of numb-protein X 2
	Cards
GeneCards	LNX2
Ensembl	LNX2 [Search_View]   ENSG00000139517 [Gene_View]
Genatlas	LNX2
GeneLynx	LNX2
eGenome	LNX2
euGene	222484
	Genomic and cartography
GoldenPath	LNX2  -  13q12.2   chr13:27018050-27092720 -  13q12.2   [Description]    (hg18-March_2006)
Ensembl	LNX2 - 13q12.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	LNX2
	Gene and transcription
Genbank	AK022995 [ ENTREZ ]
Genbank	AK095319 [ ENTREZ ]
Genbank	AK313394 [ ENTREZ ]
Genbank	BC036755 [ ENTREZ ]
Genbank	DB220129 [ ENTREZ ]
RefSeq	NM_153371 [ SRS ]    NM_153371 [ ENTREZ ]
RefSeq	AC_000056 [ SRS ]    AC_000056 [ ENTREZ ]
RefSeq	AC_000145 [ SRS ]    AC_000145 [ ENTREZ ]
RefSeq	NC_000013 [ SRS ]    NC_000013 [ ENTREZ ]
RefSeq	NT_024524 [ SRS ]    NT_024524 [ ENTREZ ]
RefSeq	NW_001838071 [ SRS ]    NW_001838071 [ ENTREZ ]
RefSeq	NW_925473 [ SRS ]    NW_925473 [ ENTREZ ]
AceView	LNX2 AceView - NCBI
Unigene	Hs.132359 [ SRS ]    Hs.132359 [ NCBI ]     HS132359 [ spliceNest ]
Fast-db	1837 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q8N448 [ SRS]    Q8N448 [ EXPASY ]     Q8N448 [ INTERPRO ]     Q8N448 [ UNIPROT ]
Prosite	PS50106 PDZ [ SRS ]    PS50106 PDZ [ Expasy ]
Prosite	PS00518 ZF_RING_1 [ SRS ]    PS00518 ZF_RING_1 [ Expasy ]
Prosite	PS50089 ZF_RING_2 [ SRS ]    PS50089 ZF_RING_2 [ Expasy ]
Interpro	IPR001478 PDZ [ SRS ]    IPR001478 PDZ [ EBI ]
Interpro	IPR001841 Znf_RING [ SRS ]    IPR001841 Znf_RING [ EBI ]
Interpro	IPR013083 Znf_RING/FYVE/PHD [ SRS ]    IPR013083 Znf_RING/FYVE/PHD [ EBI ]
CluSTr	Q8N448
Pfam	PF00595 PDZ [ SRS ]    PF00595 PDZ [ Sanger ]    pfam00595 [ NCBI-CDD ]
Pfam	PF00097 zf-C3HC4 [ SRS ]    PF00097 zf-C3HC4 [ Sanger ]    pfam00097 [ NCBI-CDD ]
Smart	SM00228 PDZ [EMBL]
Smart	SM00184 RING [EMBL]
Blocks	Q8N448
HPRD	10042
	Protein Interaction databases
DIP	Q8N448
IntAct	Q8N448
	Polymorphism : SNP, mutations, diseases
OMIM	609733    [ map ]
GENECLINICS	609733
SNP	LNX2 [dbSNP-NCBI]
SNP	NM_153371 [SNP-NCI]
SNP	LNX2 [GeneSNPs - Utah]  LNX2] [HGBASE - SRS]
HAPMAP	LNX2 [HAPMAP]
COSMIC	LNX2 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	LNX2
	General knowledge
Family Browser	LNX2 [UCSC Family Browser]
SOURCE	NM_153371
SMD	Hs.132359
SAGE	Hs.132359
GO	protein binding [Amigo]  protein binding
GO	zinc ion binding [Amigo]  zinc ion binding
GO	PDZ domain binding [Amigo]  PDZ domain binding
GO	metal ion binding [Amigo]  metal ion binding
GO	protein homooligomerization [Amigo]  protein homooligomerization
PubGene	LNX2
TreeFam	LNX2
CTD	222484 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	LNX2 Related clones (RZPD - Berlin)
	PubMed
PubMed	7 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:18:18 2008