Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC100127940 (uncharacterized LOC100127940)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100127940
Atlas_Id 66164
Location 7p22.3  [Link to chromosome band 7p22]
Location_base_pair Starts at 227554 and ends at 229557 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100127940  100127940  uncharacterized LOC100127940
Aliases
GeneCards (Weizmann)LOC100127940
Ensembl hg19 (Hinxton) [Gene_View]  chr7:227554-229557 [Contig_View]  LOC100127940 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:227554-229557 [Contig_View]  LOC100127940 [Vega]
TCGA cBioPortalLOC100127940
AceView (NCBI)LOC100127940
Genatlas (Paris)LOC100127940
WikiGenes100127940
SOURCE (Princeton)LOC100127940
Genetics Home Reference (NIH)LOC100127940
Genomic and cartography
GoldenPath hg19 (UCSC)LOC100127940  -     chr7:227554-229557 -  7p22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC100127940  -     7p22.3   [Description]    (hg38-Dec_2013)
EnsemblLOC100127940 - 7p22.3 [CytoView hg19]  LOC100127940 - 7p22.3 [CytoView hg38]
Mapping of homologs : NCBILOC100127940 [Mapview hg19]  LOC100127940 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090626
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)AC_000139 NC_000007 NT_029998 NW_001838997
Consensus coding sequences : CCDS (NCBI)LOC100127940
Cluster EST : UnigeneHs.638549 [ NCBI ]
CGAP (NCI)Hs.638549
Gene ExpressionLOC100127940 [ NCBI-GEO ]   LOC100127940 [ EBI - ARRAY_EXPRESS ]   LOC100127940 [ SEEK ]   LOC100127940 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100127940 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100127940
GTEX Portal (Tissue expression)LOC100127940
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBF4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBF4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBF4
Splice isoforms : SwissVarQ8NBF4
PhosPhoSitePlusQ8NBF4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100127940
DMDM Disease mutations100127940
Blocks (Seattle)LOC100127940
SuperfamilyQ8NBF4
Peptide AtlasQ8NBF4
IPIIPI00742658   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBF4
IntAct (EBI)Q8NBF4
BioGRIDLOC100127940
STRING (EMBL)LOC100127940
ZODIACLOC100127940
Ontologies - Pathways
QuickGOQ8NBF4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC100127940
Atlas of Cancer Signalling NetworkLOC100127940
Wikipedia pathwaysLOC100127940
Orthology - Evolution
OrthoDB100127940
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ8NBF4
HOGENOMQ8NBF4
Homologs : HomoloGeneLOC100127940
Homology/Alignments : Family Browser (UCSC)LOC100127940
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC100127940 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC100127940
dbVarLOC100127940
ClinVarLOC100127940
1000_GenomesLOC100127940 
Exome Variant ServerLOC100127940
ExAC (Exome Aggregation Consortium)LOC100127940 (select the gene name)
Genetic variants : HAPMAP100127940
Genomic Variants (DGV)LOC100127940 [DGVbeta]
DECIPHER (Syndromes)7:227554-229557  
CONAN: Copy Number AnalysisLOC100127940 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC100127940
DgiDB (Drug Gene Interaction Database)LOC100127940
DoCM (Curated mutations)LOC100127940 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC100127940 (select a term)
intoGenLOC100127940
Cancer3DLOC100127940(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC100127940
Genetic Testing Registry LOC100127940
NextProtQ8NBF4 [Medical]
TSGene100127940
GENETestsLOC100127940
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100127940
BioCentury BCIQLOC100127940
ClinGenLOC100127940
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100127940
Clinical trialLOC100127940
Miscellaneous
canSAR (ICR)LOC100127940 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100127940
EVEXLOC100127940
GoPubMedLOC100127940
iHOPLOC100127940
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:14:42 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.