Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100127947 (uncharacterized LOC100127947)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100127947
Atlas_Id 66165
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 36323734 and ends at 36329221 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100127947  100127947  uncharacterized LOC100127947
Aliases
GeneCards (Weizmann)LOC100127947
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:36323734-36329221 [Contig_View]  LOC100127947 [Vega]
TCGA cBioPortalLOC100127947
AceView (NCBI)LOC100127947
Genatlas (Paris)LOC100127947
WikiGenes100127947
SOURCE (Princeton)LOC100127947
Genetics Home Reference (NIH)LOC100127947
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100127947  -     chr1:36323734-36329221 +  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100127947  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblLOC100127947 - 1p34.3 [CytoView hg19]  LOC100127947 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBILOC100127947 [Mapview hg19]  LOC100127947 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY240960
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100127947
Cluster EST : UnigeneHs.729366 [ NCBI ]
CGAP (NCI)Hs.729366
Gene ExpressionLOC100127947 [ NCBI-GEO ]   LOC100127947 [ EBI - ARRAY_EXPRESS ]   LOC100127947 [ SEEK ]   LOC100127947 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100127947 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100127947
GTEX Portal (Tissue expression)LOC100127947
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6XCG6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6XCG6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6XCG6
Splice isoforms : SwissVarQ6XCG6
PhosPhoSitePlusQ6XCG6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100127947
DMDM Disease mutations100127947
Blocks (Seattle)LOC100127947
SuperfamilyQ6XCG6
Peptide AtlasQ6XCG6
IPIIPI00423208   
Protein Interaction databases
DIP (DOE-UCLA)Q6XCG6
IntAct (EBI)Q6XCG6
BioGRIDLOC100127947
STRING (EMBL)LOC100127947
ZODIACLOC100127947
Ontologies - Pathways
QuickGOQ6XCG6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC100127947
Atlas of Cancer Signalling NetworkLOC100127947
Wikipedia pathwaysLOC100127947
Orthology - Evolution
OrthoDB100127947
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6XCG6
HOGENOMQ6XCG6
Homologs : HomoloGeneLOC100127947
Homology/Alignments : Family Browser (UCSC)LOC100127947
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC100127947 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC100127947
dbVarLOC100127947
ClinVarLOC100127947
1000_GenomesLOC100127947 
Exome Variant ServerLOC100127947
ExAC (Exome Aggregation Consortium)LOC100127947 (select the gene name)
Genetic variants : HAPMAP100127947
Genomic Variants (DGV)LOC100127947 [DGVbeta]
DECIPHERLOC100127947 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC100127947 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC100127947
DgiDB (Drug Gene Interaction Database)LOC100127947
DoCM (Curated mutations)LOC100127947 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC100127947 (select a term)
intoGenLOC100127947
Cancer3DLOC100127947(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC100127947
Genetic Testing Registry LOC100127947
NextProtQ6XCG6 [Medical]
TSGene100127947
GENETestsLOC100127947
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100127947
BioCentury BCIQLOC100127947
ClinGenLOC100127947
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100127947
Clinical trialLOC100127947
Miscellaneous
canSAR (ICR)LOC100127947 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100127947
EVEXLOC100127947
GoPubMedLOC100127947
iHOPLOC100127947
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:23:44 CEST 2017

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