Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100128429 (uncharacterized LOC100128429)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100128429
Atlas_Id 66217
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 19569797 and ends at 19571715 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100128429  100128429  uncharacterized LOC100128429
Aliases
GeneCards (Weizmann)LOC100128429
Ensembl hg19 (Hinxton) [Gene_View]  chr19:19569797-19571715 [Contig_View]  LOC100128429 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:19569797-19571715 [Contig_View]  LOC100128429 [Vega]
TCGA cBioPortalLOC100128429
AceView (NCBI)LOC100128429
Genatlas (Paris)LOC100128429
WikiGenes100128429
SOURCE (Princeton)LOC100128429
Genetics Home Reference (NIH)LOC100128429
Genomic and cartography
GoldenPath hg19 (UCSC)LOC100128429  -     chr19:19569797-19571715 -  19p13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC100128429  -     19p13.11   [Description]    (hg38-Dec_2013)
EnsemblLOC100128429 - 19p13.11 [CytoView hg19]  LOC100128429 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBILOC100128429 [Mapview hg19]  LOC100128429 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123323
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)AC_000151 NC_000019 NT_011295 NW_001838484
Consensus coding sequences : CCDS (NCBI)LOC100128429
Cluster EST : UnigeneHs.675302 [ NCBI ]
CGAP (NCI)Hs.675302
Gene ExpressionLOC100128429 [ NCBI-GEO ]   LOC100128429 [ EBI - ARRAY_EXPRESS ]   LOC100128429 [ SEEK ]   LOC100128429 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100128429 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100128429
GTEX Portal (Tissue expression)LOC100128429
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZWC4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZWC4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZWC4
Splice isoforms : SwissVarQ6ZWC4
PhosPhoSitePlusQ6ZWC4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100128429
DMDM Disease mutations100128429
Blocks (Seattle)LOC100128429
SuperfamilyQ6ZWC4
Peptide AtlasQ6ZWC4
IPIIPI00446695   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZWC4
IntAct (EBI)Q6ZWC4
BioGRIDLOC100128429
STRING (EMBL)LOC100128429
ZODIACLOC100128429
Ontologies - Pathways
QuickGOQ6ZWC4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC100128429
Atlas of Cancer Signalling NetworkLOC100128429
Wikipedia pathwaysLOC100128429
Orthology - Evolution
OrthoDB100128429
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZWC4
HOGENOMQ6ZWC4
Homologs : HomoloGeneLOC100128429
Homology/Alignments : Family Browser (UCSC)LOC100128429
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC100128429 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC100128429
dbVarLOC100128429
ClinVarLOC100128429
1000_GenomesLOC100128429 
Exome Variant ServerLOC100128429
ExAC (Exome Aggregation Consortium)LOC100128429 (select the gene name)
Genetic variants : HAPMAP100128429
Genomic Variants (DGV)LOC100128429 [DGVbeta]
DECIPHER (Syndromes)19:19569797-19571715  
CONAN: Copy Number AnalysisLOC100128429 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC100128429
DgiDB (Drug Gene Interaction Database)LOC100128429
DoCM (Curated mutations)LOC100128429 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC100128429 (select a term)
intoGenLOC100128429
Cancer3DLOC100128429(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC100128429
Genetic Testing Registry LOC100128429
NextProtQ6ZWC4 [Medical]
TSGene100128429
GENETestsLOC100128429
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100128429
BioCentury BCIQLOC100128429
ClinGenLOC100128429
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128429
Clinical trialLOC100128429
Miscellaneous
canSAR (ICR)LOC100128429 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100128429
EVEXLOC100128429
GoPubMedLOC100128429
iHOPLOC100128429
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:14:53 CET 2017

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