Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100128554 (uncharacterized LOC100128554)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100128554
Atlas_Id 66228
Location 12q24.32  [Link to chromosome band 12q24]
Location_base_pair Starts at 126927027 and ends at 126957331 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100128554  100128554  uncharacterized LOC100128554
Aliases
GeneCards (Weizmann)LOC100128554
Ensembl hg19 (Hinxton)ENSG00000214043 [Gene_View]  chr12:126927027-126957331 [Contig_View]  LOC100128554 [Vega]
Ensembl hg38 (Hinxton)ENSG00000214043 [Gene_View]  chr12:126927027-126957331 [Contig_View]  LOC100128554 [Vega]
ICGC DataPortalENSG00000214043
TCGA cBioPortalLOC100128554
AceView (NCBI)LOC100128554
Genatlas (Paris)LOC100128554
WikiGenes100128554
SOURCE (Princeton)LOC100128554
Genetics Home Reference (NIH)LOC100128554
Genomic and cartography
GoldenPath hg19 (UCSC)LOC100128554  -     chr12:126927027-126957331 +  12q24.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC100128554  -     12q24.32   [Description]    (hg38-Dec_2013)
EnsemblLOC100128554 - 12q24.32 [CytoView hg19]  LOC100128554 - 12q24.32 [CytoView hg38]
Mapping of homologs : NCBILOC100128554 [Mapview hg19]  LOC100128554 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC035235 BC039370 BC118583 BC121801 HG505319
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929386
Consensus coding sequences : CCDS (NCBI)LOC100128554
Cluster EST : UnigeneHs.408255 [ NCBI ]
CGAP (NCI)Hs.408255
Alternative Splicing GalleryENSG00000214043
Gene ExpressionLOC100128554 [ NCBI-GEO ]   LOC100128554 [ EBI - ARRAY_EXPRESS ]   LOC100128554 [ SEEK ]   LOC100128554 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100128554 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100128554
GTEX Portal (Tissue expression)LOC100128554
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0VFX4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0VFX4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0VFX4
Splice isoforms : SwissVarQ0VFX4
PhosPhoSitePlusQ0VFX4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100128554
DMDM Disease mutations100128554
Blocks (Seattle)LOC100128554
SuperfamilyQ0VFX4
Human Protein AtlasENSG00000214043
Peptide AtlasQ0VFX4
IPIIPI00785078   
Protein Interaction databases
DIP (DOE-UCLA)Q0VFX4
IntAct (EBI)Q0VFX4
FunCoupENSG00000214043
BioGRIDLOC100128554
STRING (EMBL)LOC100128554
ZODIACLOC100128554
Ontologies - Pathways
QuickGOQ0VFX4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC100128554
Atlas of Cancer Signalling NetworkLOC100128554
Wikipedia pathwaysLOC100128554
Orthology - Evolution
OrthoDB100128554
GeneTree (enSembl)ENSG00000214043
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ0VFX4
HOGENOMQ0VFX4
Homologs : HomoloGeneLOC100128554
Homology/Alignments : Family Browser (UCSC)LOC100128554
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC100128554 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC100128554
dbVarLOC100128554
ClinVarLOC100128554
1000_GenomesLOC100128554 
Exome Variant ServerLOC100128554
ExAC (Exome Aggregation Consortium)LOC100128554 (select the gene name)
Genetic variants : HAPMAP100128554
Genomic Variants (DGV)LOC100128554 [DGVbeta]
DECIPHER (Syndromes)12:126927027-126957331  ENSG00000214043
CONAN: Copy Number AnalysisLOC100128554 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC100128554
DgiDB (Drug Gene Interaction Database)LOC100128554
DoCM (Curated mutations)LOC100128554 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC100128554 (select a term)
intoGenLOC100128554
Cancer3DLOC100128554(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC100128554
Genetic Testing Registry LOC100128554
NextProtQ0VFX4 [Medical]
TSGene100128554
GENETestsLOC100128554
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100128554
BioCentury BCIQLOC100128554
ClinGenLOC100128554
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128554
Clinical trialLOC100128554
Miscellaneous
canSAR (ICR)LOC100128554 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100128554
EVEXLOC100128554
GoPubMedLOC100128554
iHOPLOC100128554
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:14:55 CET 2017

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