Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100128770 (uncharacterized LOC100128770)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100128770
Atlas_Id 66246
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 3032481 and ends at 3039132 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100128770  100128770  uncharacterized LOC100128770
Aliases
GeneCards (Weizmann)LOC100128770
Ensembl hg19 (Hinxton)ENSG00000205890 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205890 [Gene_View]  chr16:3032481-3039132 [Contig_View]  LOC100128770 [Vega]
ICGC DataPortalENSG00000205890
TCGA cBioPortalLOC100128770
AceView (NCBI)LOC100128770
Genatlas (Paris)LOC100128770
WikiGenes100128770
SOURCE (Princeton)LOC100128770
Genetics Home Reference (NIH)LOC100128770
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100128770  -     chr16:3032481-3039132 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100128770  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblLOC100128770 - 16p13.3 [CytoView hg19]  LOC100128770 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBILOC100128770 [Mapview hg19]  LOC100128770 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA916788 AK128093
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100128770
Cluster EST : UnigeneHs.666223 [ NCBI ]
CGAP (NCI)Hs.666223
Alternative Splicing GalleryENSG00000205890
Gene ExpressionLOC100128770 [ NCBI-GEO ]   LOC100128770 [ EBI - ARRAY_EXPRESS ]   LOC100128770 [ SEEK ]   LOC100128770 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100128770 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100128770
GTEX Portal (Tissue expression)LOC100128770
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRN7
Splice isoforms : SwissVarQ6ZRN7
PhosPhoSitePlusQ6ZRN7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100128770
DMDM Disease mutations100128770
Blocks (Seattle)LOC100128770
SuperfamilyQ6ZRN7
Human Protein AtlasENSG00000205890
Peptide AtlasQ6ZRN7
IPIIPI00443954   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRN7
IntAct (EBI)Q6ZRN7
FunCoupENSG00000205890
BioGRIDLOC100128770
STRING (EMBL)LOC100128770
ZODIACLOC100128770
Ontologies - Pathways
QuickGOQ6ZRN7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC100128770
Atlas of Cancer Signalling NetworkLOC100128770
Wikipedia pathwaysLOC100128770
Orthology - Evolution
OrthoDB100128770
GeneTree (enSembl)ENSG00000205890
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZRN7
HOGENOMQ6ZRN7
Homologs : HomoloGeneLOC100128770
Homology/Alignments : Family Browser (UCSC)LOC100128770
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC100128770 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC100128770
dbVarLOC100128770
ClinVarLOC100128770
1000_GenomesLOC100128770 
Exome Variant ServerLOC100128770
ExAC (Exome Aggregation Consortium)LOC100128770 (select the gene name)
Genetic variants : HAPMAP100128770
Genomic Variants (DGV)LOC100128770 [DGVbeta]
DECIPHERLOC100128770 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC100128770 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC100128770
DgiDB (Drug Gene Interaction Database)LOC100128770
DoCM (Curated mutations)LOC100128770 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC100128770 (select a term)
intoGenLOC100128770
Cancer3DLOC100128770(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC100128770
Genetic Testing Registry LOC100128770
NextProtQ6ZRN7 [Medical]
TSGene100128770
GENETestsLOC100128770
Target ValidationLOC100128770
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100128770
BioCentury BCIQLOC100128770
ClinGenLOC100128770
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128770
Clinical trialLOC100128770
Miscellaneous
canSAR (ICR)LOC100128770 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100128770
EVEXLOC100128770
GoPubMedLOC100128770
iHOPLOC100128770
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:17:04 CEST 2017

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