Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100129240 (uncharacterized LOC100129240)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100129240
Atlas_Id 66287
Location 4q35.1  [Link to chromosome band 4q35]
Location_base_pair Starts at 185905431 and ends at 185909281 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100129240  100129240  uncharacterized LOC100129240
Aliases
GeneCards (Weizmann)LOC100129240
Ensembl hg19 (Hinxton) [Gene_View]  chr4:185905431-185909281 [Contig_View]  LOC100129240 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:185905431-185909281 [Contig_View]  LOC100129240 [Vega]
TCGA cBioPortalLOC100129240
AceView (NCBI)LOC100129240
Genatlas (Paris)LOC100129240
WikiGenes100129240
SOURCE (Princeton)LOC100129240
Genetics Home Reference (NIH)LOC100129240
Genomic and cartography
GoldenPath hg19 (UCSC)LOC100129240  -     chr4:185905431-185909281 -  4q35.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC100129240  -     4q35.1   [Description]    (hg38-Dec_2013)
EnsemblLOC100129240 - 4q35.1 [CytoView hg19]  LOC100129240 - 4q35.1 [CytoView hg38]
Mapping of homologs : NCBILOC100129240 [Mapview hg19]  LOC100129240 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128083
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)AC_000136 NC_000004 NT_022792 NW_001838921
Consensus coding sequences : CCDS (NCBI)LOC100129240
Cluster EST : UnigeneHs.640100 [ NCBI ]
CGAP (NCI)Hs.640100
Gene ExpressionLOC100129240 [ NCBI-GEO ]   LOC100129240 [ EBI - ARRAY_EXPRESS ]   LOC100129240 [ SEEK ]   LOC100129240 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100129240 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129240
GTEX Portal (Tissue expression)LOC100129240
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRP5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRP5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRP5
Splice isoforms : SwissVarQ6ZRP5
PhosPhoSitePlusQ6ZRP5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100129240
DMDM Disease mutations100129240
Blocks (Seattle)LOC100129240
SuperfamilyQ6ZRP5
Peptide AtlasQ6ZRP5
IPIIPI00443969   IPI00867583   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRP5
IntAct (EBI)Q6ZRP5
BioGRIDLOC100129240
STRING (EMBL)LOC100129240
ZODIACLOC100129240
Ontologies - Pathways
QuickGOQ6ZRP5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC100129240
Atlas of Cancer Signalling NetworkLOC100129240
Wikipedia pathwaysLOC100129240
Orthology - Evolution
OrthoDB100129240
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZRP5
HOGENOMQ6ZRP5
Homologs : HomoloGeneLOC100129240
Homology/Alignments : Family Browser (UCSC)LOC100129240
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC100129240 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC100129240
dbVarLOC100129240
ClinVarLOC100129240
1000_GenomesLOC100129240 
Exome Variant ServerLOC100129240
ExAC (Exome Aggregation Consortium)LOC100129240 (select the gene name)
Genetic variants : HAPMAP100129240
Genomic Variants (DGV)LOC100129240 [DGVbeta]
DECIPHER (Syndromes)4:185905431-185909281  
CONAN: Copy Number AnalysisLOC100129240 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC100129240
DgiDB (Drug Gene Interaction Database)LOC100129240
DoCM (Curated mutations)LOC100129240 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC100129240 (select a term)
intoGenLOC100129240
Cancer3DLOC100129240(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC100129240
Genetic Testing Registry LOC100129240
NextProtQ6ZRP5 [Medical]
TSGene100129240
GENETestsLOC100129240
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100129240
BioCentury BCIQLOC100129240
ClinGenLOC100129240
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129240
Clinical trialLOC100129240
Miscellaneous
canSAR (ICR)LOC100129240 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100129240
EVEXLOC100129240
GoPubMedLOC100129240
iHOPLOC100129240
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:15:09 CET 2017

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