Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100129540 (uncharacterized LOC100129540)

Identity

Alias (NCBI)-
HGNC (Hugo) -
LocusID (NCBI) 100129540
Atlas_Id 79388
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 78978889 and ends at 78985926 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100129540  100129540  uncharacterized LOC100129540
Aliases
GeneCards (Weizmann)LOC100129540
Ensembl hg19 (Hinxton)ENSG00000177699 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177699 [Gene_View]  ENSG00000177699 [Sequence]  chr15:78978889-78985926 [Contig_View]  LOC100129540 [Vega]
ICGC DataPortalENSG00000177699
TCGA cBioPortalLOC100129540
AceView (NCBI)LOC100129540
Genatlas (Paris)LOC100129540
WikiGenes100129540
SOURCE (Princeton)LOC100129540
Genetics Home Reference (NIH)LOC100129540
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100129540  -     chr15:78978889-78985926 +  15q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100129540  -     15q25.1   [Description]    (hg19-Feb_2009)
GoldenPathLOC100129540 - 15q25.1 [CytoView hg19]  LOC100129540 - 15q25.1 [CytoView hg38]
ImmunoBaseENSG00000177699
genome Data Viewer NCBILOC100129540 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF370414 AK097337
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100129540
Alternative Splicing GalleryENSG00000177699
Gene ExpressionLOC100129540 [ NCBI-GEO ]   LOC100129540 [ EBI - ARRAY_EXPRESS ]   LOC100129540 [ SEEK ]   LOC100129540 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100129540 [ Firebrowse - Broad ]
GenevisibleExpression of LOC100129540 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129540
GTEX Portal (Tissue expression)LOC100129540
Human Protein AtlasENSG00000177699-LOC100129540 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100129540
DMDM Disease mutations100129540
Blocks (Seattle)LOC100129540
Human Protein Atlas [tissue]ENSG00000177699-LOC100129540 [tissue]
IPIIPI00929240   
Protein Interaction databases
FunCoupENSG00000177699
BioGRIDLOC100129540
STRING (EMBL)LOC100129540
ZODIACLOC100129540
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100129540
BioCentury BCIQLOC100129540
ClinGenLOC100129540
Clinical trials, drugs, therapy
Protein Interactions : CTD100129540
Clinical trialLOC100129540
Miscellaneous
canSAR (ICR)LOC100129540 (select the gene name)
HarmonizomeLOC100129540
DataMed IndexLOC100129540
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100129540
EVEXLOC100129540
GoPubMedLOC100129540
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 16:06:33 CEST 2020

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