Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC100130331 (POTE ankyrin domain family, member F pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100130331
Atlas_Id 66381
Location 1q43  [Link to chromosome band 1q43]
Location_base_pair Starts at 238025475 and ends at 238091619 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100130331  100130331  POTE ankyrin domain family, member F pseudogene
Aliases
GeneCards (Weizmann)LOC100130331
Ensembl hg19 (Hinxton)ENSG00000237250 [Gene_View]  chr1:238025475-238091619 [Contig_View]  LOC100130331 [Vega]
Ensembl hg38 (Hinxton)ENSG00000237250 [Gene_View]  chr1:238025475-238091619 [Contig_View]  LOC100130331 [Vega]
ICGC DataPortalENSG00000237250
TCGA cBioPortalLOC100130331
AceView (NCBI)LOC100130331
Genatlas (Paris)LOC100130331
WikiGenes100130331
SOURCE (Princeton)LOC100130331
Genetics Home Reference (NIH)LOC100130331
Genomic and cartography
GoldenPath hg19 (UCSC)LOC100130331  -     chr1:238025475-238091619 +  1q43   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC100130331  -     1q43   [Description]    (hg38-Dec_2013)
EnsemblLOC100130331 - 1q43 [CytoView hg19]  LOC100130331 - 1q43 [CytoView hg38]
Mapping of homologs : NCBILOC100130331 [Mapview hg19]  LOC100130331 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL122093 HG493361
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_008799 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)LOC100130331
Cluster EST : UnigeneHs.661736 [ NCBI ]
CGAP (NCI)Hs.661736
Alternative Splicing GalleryENSG00000237250
Gene ExpressionLOC100130331 [ NCBI-GEO ]   LOC100130331 [ EBI - ARRAY_EXPRESS ]   LOC100130331 [ SEEK ]   LOC100130331 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100130331 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100130331
GTEX Portal (Tissue expression)LOC100130331
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100130331
DMDM Disease mutations100130331
Blocks (Seattle)LOC100130331
Human Protein AtlasENSG00000237250
IPIIPI00555809   
Protein Interaction databases
FunCoupENSG00000237250
BioGRIDLOC100130331
STRING (EMBL)LOC100130331
ZODIACLOC100130331
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100130331
BioCentury BCIQLOC100130331
ClinGenLOC100130331
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130331
Clinical trialLOC100130331
Miscellaneous
canSAR (ICR)LOC100130331 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100130331
EVEXLOC100130331
GoPubMedLOC100130331
iHOPLOC100130331
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:15:29 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.