Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC100130417 (uncharacterized LOC100130417)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100130417
Atlas_Id 66386
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 917575 and ends at 921016 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100130417  100130417  uncharacterized LOC100130417
Aliases
GeneCards (Weizmann)LOC100130417
Ensembl hg19 (Hinxton)ENSG00000223764 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223764 [Gene_View]  chr1:917575-921016 [Contig_View]  LOC100130417 [Vega]
ICGC DataPortalENSG00000223764
TCGA cBioPortalLOC100130417
AceView (NCBI)LOC100130417
Genatlas (Paris)LOC100130417
WikiGenes100130417
SOURCE (Princeton)LOC100130417
Genetics Home Reference (NIH)LOC100130417
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100130417  -     chr1:917575-921016 -  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100130417  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblLOC100130417 - 1p36.33 [CytoView hg19]  LOC100130417 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBILOC100130417 [Mapview hg19]  LOC100130417 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096928 BC025320 BC144023 BC144024 BX108591
RefSeq transcript (Entrez)NM_175912
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100130417
Cluster EST : UnigeneHs.200644 [ NCBI ]
CGAP (NCI)Hs.200644
Alternative Splicing GalleryENSG00000223764
Gene ExpressionLOC100130417 [ NCBI-GEO ]   LOC100130417 [ EBI - ARRAY_EXPRESS ]   LOC100130417 [ SEEK ]   LOC100130417 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100130417 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100130417
GTEX Portal (Tissue expression)LOC100130417
Human Protein AtlasENSG00000223764-LOC100130417 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100130417
DMDM Disease mutations100130417
Blocks (Seattle)LOC100130417
Human Protein Atlas [tissue]ENSG00000223764-LOC100130417 [tissue]
IPIIPI00167456   
Protein Interaction databases
FunCoupENSG00000223764
BioGRIDLOC100130417
STRING (EMBL)LOC100130417
ZODIACLOC100130417
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100130417
BioCentury BCIQLOC100130417
ClinGenLOC100130417
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130417
Clinical trialLOC100130417
Miscellaneous
canSAR (ICR)LOC100130417 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100130417
EVEXLOC100130417
GoPubMedLOC100130417
iHOPLOC100130417
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:47:07 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.