Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC100130691 (uncharacterized LOC100130691)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100130691
Atlas_Id 66418
Location 2q31.2  [Link to chromosome band 2q31]
Location_base_pair Starts at 178148240 and ends at 178257419 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100130691  100130691  uncharacterized LOC100130691
Aliases
GeneCards (Weizmann)LOC100130691
Ensembl hg19 (Hinxton)ENSG00000213963 [Gene_View]  chr2:178148240-178257419 [Contig_View]  LOC100130691 [Vega]
Ensembl hg38 (Hinxton)ENSG00000213963 [Gene_View]  chr2:178148240-178257419 [Contig_View]  LOC100130691 [Vega]
ICGC DataPortalENSG00000213963
TCGA cBioPortalLOC100130691
AceView (NCBI)LOC100130691
Genatlas (Paris)LOC100130691
WikiGenes100130691
SOURCE (Princeton)LOC100130691
Genetics Home Reference (NIH)LOC100130691
Genomic and cartography
GoldenPath hg19 (UCSC)LOC100130691  -     chr2:178148240-178257419 -  2q31.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC100130691  -     2q31.2   [Description]    (hg38-Dec_2013)
EnsemblLOC100130691 - 2q31.2 [CytoView hg19]  LOC100130691 - 2q31.2 [CytoView hg38]
Mapping of homologs : NCBILOC100130691 [Mapview hg19]  LOC100130691 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126517 AK128418 AL833088 BC039522 BC093095
RefSeq transcript (Entrez)NM_182585
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)LOC100130691
Cluster EST : UnigeneHs.728371 [ NCBI ]
CGAP (NCI)Hs.728371
Alternative Splicing GalleryENSG00000213963
Gene ExpressionLOC100130691 [ NCBI-GEO ]   LOC100130691 [ EBI - ARRAY_EXPRESS ]   LOC100130691 [ SEEK ]   LOC100130691 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100130691 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130691
GTEX Portal (Tissue expression)LOC100130691
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86TA4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86TA4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86TA4
Splice isoforms : SwissVarQ86TA4
PhosPhoSitePlusQ86TA4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100130691
DMDM Disease mutations100130691
Blocks (Seattle)LOC100130691
SuperfamilyQ86TA4
Human Protein AtlasENSG00000213963
Peptide AtlasQ86TA4
IPIIPI00328524   
Protein Interaction databases
DIP (DOE-UCLA)Q86TA4
IntAct (EBI)Q86TA4
FunCoupENSG00000213963
BioGRIDLOC100130691
STRING (EMBL)LOC100130691
ZODIACLOC100130691
Ontologies - Pathways
QuickGOQ86TA4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC100130691
Atlas of Cancer Signalling NetworkLOC100130691
Wikipedia pathwaysLOC100130691
Orthology - Evolution
OrthoDB100130691
GeneTree (enSembl)ENSG00000213963
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ86TA4
HOGENOMQ86TA4
Homologs : HomoloGeneLOC100130691
Homology/Alignments : Family Browser (UCSC)LOC100130691
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC100130691 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC100130691
dbVarLOC100130691
ClinVarLOC100130691
1000_GenomesLOC100130691 
Exome Variant ServerLOC100130691
ExAC (Exome Aggregation Consortium)LOC100130691 (select the gene name)
Genetic variants : HAPMAP100130691
Genomic Variants (DGV)LOC100130691 [DGVbeta]
DECIPHER (Syndromes)2:178148240-178257419  ENSG00000213963
CONAN: Copy Number AnalysisLOC100130691 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC100130691
DgiDB (Drug Gene Interaction Database)LOC100130691
DoCM (Curated mutations)LOC100130691 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC100130691 (select a term)
intoGenLOC100130691
Cancer3DLOC100130691(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC100130691
Genetic Testing Registry LOC100130691
NextProtQ86TA4 [Medical]
TSGene100130691
GENETestsLOC100130691
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100130691
BioCentury BCIQLOC100130691
ClinGenLOC100130691
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130691
Clinical trialLOC100130691
Miscellaneous
canSAR (ICR)LOC100130691 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100130691
EVEXLOC100130691
GoPubMedLOC100130691
iHOPLOC100130691
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:15:37 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.