Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100131831 (uncharacterized LOC100131831)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100131831
Atlas_Id 66515
Location 19p13.13  [Link to chromosome band 19p13]
Location_base_pair Starts at 13948620 and ends at 13951000 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100131831  100131831  uncharacterized LOC100131831
Aliases
GeneCards (Weizmann)LOC100131831
Ensembl hg19 (Hinxton) [Gene_View]  chr19:13948620-13951000 [Contig_View]  LOC100131831 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:13948620-13951000 [Contig_View]  LOC100131831 [Vega]
TCGA cBioPortalLOC100131831
AceView (NCBI)LOC100131831
Genatlas (Paris)LOC100131831
WikiGenes100131831
SOURCE (Princeton)LOC100131831
Genetics Home Reference (NIH)LOC100131831
Genomic and cartography
GoldenPath hg19 (UCSC)LOC100131831  -     chr19:13948620-13951000 -  19p13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC100131831  -     19p13.13   [Description]    (hg38-Dec_2013)
EnsemblLOC100131831 - 19p13.13 [CytoView hg19]  LOC100131831 - 19p13.13 [CytoView hg38]
Mapping of homologs : NCBILOC100131831 [Mapview hg19]  LOC100131831 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK129685
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)AC_000151 NC_000019 NT_011295 NW_001838483
Consensus coding sequences : CCDS (NCBI)LOC100131831
Cluster EST : UnigeneHs.625909 [ NCBI ]
CGAP (NCI)Hs.625909
Gene ExpressionLOC100131831 [ NCBI-GEO ]   LOC100131831 [ EBI - ARRAY_EXPRESS ]   LOC100131831 [ SEEK ]   LOC100131831 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100131831 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100131831
GTEX Portal (Tissue expression)LOC100131831
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZPA2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZPA2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZPA2
Splice isoforms : SwissVarQ6ZPA2
PhosPhoSitePlusQ6ZPA2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100131831
DMDM Disease mutations100131831
Blocks (Seattle)LOC100131831
SuperfamilyQ6ZPA2
Peptide AtlasQ6ZPA2
IPIIPI00442985   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZPA2
IntAct (EBI)Q6ZPA2
BioGRIDLOC100131831
STRING (EMBL)LOC100131831
ZODIACLOC100131831
Ontologies - Pathways
QuickGOQ6ZPA2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC100131831
Atlas of Cancer Signalling NetworkLOC100131831
Wikipedia pathwaysLOC100131831
Orthology - Evolution
OrthoDB100131831
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZPA2
HOGENOMQ6ZPA2
Homologs : HomoloGeneLOC100131831
Homology/Alignments : Family Browser (UCSC)LOC100131831
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC100131831 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC100131831
dbVarLOC100131831
ClinVarLOC100131831
1000_GenomesLOC100131831 
Exome Variant ServerLOC100131831
ExAC (Exome Aggregation Consortium)LOC100131831 (select the gene name)
Genetic variants : HAPMAP100131831
Genomic Variants (DGV)LOC100131831 [DGVbeta]
DECIPHER (Syndromes)19:13948620-13951000  
CONAN: Copy Number AnalysisLOC100131831 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC100131831
DgiDB (Drug Gene Interaction Database)LOC100131831
DoCM (Curated mutations)LOC100131831 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC100131831 (select a term)
intoGenLOC100131831
Cancer3DLOC100131831(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC100131831
Genetic Testing Registry LOC100131831
NextProtQ6ZPA2 [Medical]
TSGene100131831
GENETestsLOC100131831
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100131831
BioCentury BCIQLOC100131831
ClinGenLOC100131831
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100131831
Clinical trialLOC100131831
Miscellaneous
canSAR (ICR)LOC100131831 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100131831
EVEXLOC100131831
GoPubMedLOC100131831
iHOPLOC100131831
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:15:58 CET 2017

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