Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100132272 (uncharacterized LOC100132272)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100132272
Atlas_Id 66546
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 42746927 and ends at 42749125 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100132272  100132272  uncharacterized LOC100132272
Aliases
GeneCards (Weizmann)LOC100132272
Ensembl hg19 (Hinxton) [Gene_View]  chr19:42746927-42749125 [Contig_View]  LOC100132272 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:42746927-42749125 [Contig_View]  LOC100132272 [Vega]
TCGA cBioPortalLOC100132272
AceView (NCBI)LOC100132272
Genatlas (Paris)LOC100132272
WikiGenes100132272
SOURCE (Princeton)LOC100132272
Genetics Home Reference (NIH)LOC100132272
Genomic and cartography
GoldenPath hg19 (UCSC)LOC100132272  -     chr19:42746927-42749125 +  19q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC100132272  -     19q13.2   [Description]    (hg38-Dec_2013)
EnsemblLOC100132272 - 19q13.2 [CytoView hg19]  LOC100132272 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBILOC100132272 [Mapview hg19]  LOC100132272 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124207
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838496 NW_004078099
Consensus coding sequences : CCDS (NCBI)LOC100132272
Cluster EST : UnigeneHs.711405 [ NCBI ]
CGAP (NCI)Hs.711405
Gene ExpressionLOC100132272 [ NCBI-GEO ]   LOC100132272 [ EBI - ARRAY_EXPRESS ]   LOC100132272 [ SEEK ]   LOC100132272 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100132272 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132272
GTEX Portal (Tissue expression)LOC100132272
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZVQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZVQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZVQ6
Splice isoforms : SwissVarQ6ZVQ6
PhosPhoSitePlusQ6ZVQ6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100132272
DMDM Disease mutations100132272
Blocks (Seattle)LOC100132272
SuperfamilyQ6ZVQ6
Peptide AtlasQ6ZVQ6
IPIIPI00446334   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZVQ6
IntAct (EBI)Q6ZVQ6
BioGRIDLOC100132272
STRING (EMBL)LOC100132272
ZODIACLOC100132272
Ontologies - Pathways
QuickGOQ6ZVQ6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC100132272
Atlas of Cancer Signalling NetworkLOC100132272
Wikipedia pathwaysLOC100132272
Orthology - Evolution
OrthoDB100132272
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZVQ6
HOGENOMQ6ZVQ6
Homologs : HomoloGeneLOC100132272
Homology/Alignments : Family Browser (UCSC)LOC100132272
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC100132272 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC100132272
dbVarLOC100132272
ClinVarLOC100132272
1000_GenomesLOC100132272 
Exome Variant ServerLOC100132272
ExAC (Exome Aggregation Consortium)LOC100132272 (select the gene name)
Genetic variants : HAPMAP100132272
Genomic Variants (DGV)LOC100132272 [DGVbeta]
DECIPHER (Syndromes)19:42746927-42749125  
CONAN: Copy Number AnalysisLOC100132272 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC100132272
DgiDB (Drug Gene Interaction Database)LOC100132272
DoCM (Curated mutations)LOC100132272 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC100132272 (select a term)
intoGenLOC100132272
Cancer3DLOC100132272(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC100132272
Genetic Testing Registry LOC100132272
NextProtQ6ZVQ6 [Medical]
TSGene100132272
GENETestsLOC100132272
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100132272
BioCentury BCIQLOC100132272
ClinGenLOC100132272
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132272
Clinical trialLOC100132272
Miscellaneous
canSAR (ICR)LOC100132272 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100132272
EVEXLOC100132272
GoPubMedLOC100132272
iHOPLOC100132272
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:16:05 CET 2017

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