Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100133130 (PRO1102)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100133130
Atlas_Id 66580
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 51261858 and ends at 51263765 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100133130  100133130  PRO1102
Aliases
GeneCards (Weizmann)LOC100133130
Ensembl hg19 (Hinxton) [Gene_View]  chr10:51261858-51263765 [Contig_View]  LOC100133130 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:51261858-51263765 [Contig_View]  LOC100133130 [Vega]
TCGA cBioPortalLOC100133130
AceView (NCBI)LOC100133130
Genatlas (Paris)LOC100133130
WikiGenes100133130
SOURCE (Princeton)LOC100133130
Genetics Home Reference (NIH)LOC100133130
Genomic and cartography
GoldenPath hg19 (UCSC)LOC100133130  -     chr10:51261858-51263765 -  10q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC100133130  -     10q11.23   [Description]    (hg38-Dec_2013)
EnsemblLOC100133130 - 10q11.23 [CytoView hg19]  LOC100133130 - 10q11.23 [CytoView hg38]
Mapping of homologs : NCBILOC100133130 [Mapview hg19]  LOC100133130 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF130105
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000010 NT_033985
Consensus coding sequences : CCDS (NCBI)LOC100133130
Cluster EST : UnigeneHs.729422 [ NCBI ]
CGAP (NCI)Hs.729422
Gene ExpressionLOC100133130 [ NCBI-GEO ]   LOC100133130 [ EBI - ARRAY_EXPRESS ]   LOC100133130 [ SEEK ]   LOC100133130 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100133130 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100133130
GTEX Portal (Tissue expression)LOC100133130
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H374   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H374  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H374
Splice isoforms : SwissVarQ9H374
PhosPhoSitePlusQ9H374
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100133130
DMDM Disease mutations100133130
Blocks (Seattle)LOC100133130
SuperfamilyQ9H374
Peptide AtlasQ9H374
IPIIPI00888113   
Protein Interaction databases
DIP (DOE-UCLA)Q9H374
IntAct (EBI)Q9H374
BioGRIDLOC100133130
STRING (EMBL)LOC100133130
ZODIACLOC100133130
Ontologies - Pathways
QuickGOQ9H374
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC100133130
Atlas of Cancer Signalling NetworkLOC100133130
Wikipedia pathwaysLOC100133130
Orthology - Evolution
OrthoDB100133130
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ9H374
HOGENOMQ9H374
Homologs : HomoloGeneLOC100133130
Homology/Alignments : Family Browser (UCSC)LOC100133130
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC100133130 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC100133130
dbVarLOC100133130
ClinVarLOC100133130
1000_GenomesLOC100133130 
Exome Variant ServerLOC100133130
ExAC (Exome Aggregation Consortium)LOC100133130 (select the gene name)
Genetic variants : HAPMAP100133130
Genomic Variants (DGV)LOC100133130 [DGVbeta]
DECIPHER (Syndromes)10:51261858-51263765  
CONAN: Copy Number AnalysisLOC100133130 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC100133130
DgiDB (Drug Gene Interaction Database)LOC100133130
DoCM (Curated mutations)LOC100133130 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC100133130 (select a term)
intoGenLOC100133130
Cancer3DLOC100133130(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC100133130
Genetic Testing Registry LOC100133130
NextProtQ9H374 [Medical]
TSGene100133130
GENETestsLOC100133130
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100133130
BioCentury BCIQLOC100133130
ClinGenLOC100133130
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100133130
Clinical trialLOC100133130
Miscellaneous
canSAR (ICR)LOC100133130 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100133130
EVEXLOC100133130
GoPubMedLOC100133130
iHOPLOC100133130
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:16:12 CET 2017

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