Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100133315 (transient receptor potential cation channel, subfamily C, member 2-like)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100133315
Atlas_Id 52003
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 71576555 and ends at 71639493 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100133315  100133315  transient receptor potential cation channel, subfamily C, member 2-like
Aliases
GeneCards (Weizmann)LOC100133315
Ensembl hg19 (Hinxton) [Gene_View]  chr11:71576555-71639493 [Contig_View]  LOC100133315 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:71576555-71639493 [Contig_View]  LOC100133315 [Vega]
TCGA cBioPortalLOC100133315
AceView (NCBI)LOC100133315
Genatlas (Paris)LOC100133315
WikiGenes100133315
SOURCE (Princeton)LOC100133315
Genetics Home Reference (NIH)LOC100133315
Genomic and cartography
GoldenPath hg19 (UCSC)LOC100133315  -     chr11:71576555-71639493 -  11q13.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC100133315  -     11q13.4   [Description]    (hg38-Dec_2013)
EnsemblLOC100133315 - 11q13.4 [CytoView hg19]  LOC100133315 - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBILOC100133315 [Mapview hg19]  LOC100133315 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BQ014444 BX094719 BX102226
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)LOC100133315
Cluster EST : UnigeneHs.150324 [ NCBI ]
CGAP (NCI)Hs.150324
Gene ExpressionLOC100133315 [ NCBI-GEO ]   LOC100133315 [ EBI - ARRAY_EXPRESS ]   LOC100133315 [ SEEK ]   LOC100133315 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100133315 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100133315
GTEX Portal (Tissue expression)LOC100133315
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZNB5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZNB5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZNB5
Splice isoforms : SwissVarQ6ZNB5
PhosPhoSitePlusQ6ZNB5
Domains : Interpro (EBI)Galactose-bd-like    Xrcc1_N   
Domain families : Pfam (Sanger)XRCC1_N (PF01834)   
Domain families : Pfam (NCBI)pfam01834   
Conserved Domain (NCBI)LOC100133315
DMDM Disease mutations100133315
Blocks (Seattle)LOC100133315
SuperfamilyQ6ZNB5
Peptide AtlasQ6ZNB5
IPIIPI00442272   IPI00975705   IPI00982466   IPI00981118   IPI00981823   IPI00983143   IPI00983823   IPI00984998   IPI00984492   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZNB5
IntAct (EBI)Q6ZNB5
BioGRIDLOC100133315
STRING (EMBL)LOC100133315
ZODIACLOC100133315
Ontologies - Pathways
QuickGOQ6ZNB5
Ontology : AmiGOsingle strand break repair  damaged DNA binding  nucleus  
Ontology : EGO-EBIsingle strand break repair  damaged DNA binding  nucleus  
NDEx NetworkLOC100133315
Atlas of Cancer Signalling NetworkLOC100133315
Wikipedia pathwaysLOC100133315
Orthology - Evolution
OrthoDB100133315
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZNB5
HOGENOMQ6ZNB5
Homologs : HomoloGeneLOC100133315
Homology/Alignments : Family Browser (UCSC)LOC100133315
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC100133315 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC100133315
dbVarLOC100133315
ClinVarLOC100133315
1000_GenomesLOC100133315 
Exome Variant ServerLOC100133315
ExAC (Exome Aggregation Consortium)LOC100133315 (select the gene name)
Genetic variants : HAPMAP100133315
Genomic Variants (DGV)LOC100133315 [DGVbeta]
DECIPHER (Syndromes)11:71576555-71639493  
CONAN: Copy Number AnalysisLOC100133315 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC100133315
DgiDB (Drug Gene Interaction Database)LOC100133315
DoCM (Curated mutations)LOC100133315 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC100133315 (select a term)
intoGenLOC100133315
Cancer3DLOC100133315(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC100133315
Genetic Testing Registry LOC100133315
NextProtQ6ZNB5 [Medical]
TSGene100133315
GENETestsLOC100133315
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100133315
BioCentury BCIQLOC100133315
ClinGenLOC100133315
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100133315
Clinical trialLOC100133315
Miscellaneous
canSAR (ICR)LOC100133315 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100133315
EVEXLOC100133315
GoPubMedLOC100133315
iHOPLOC100133315
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:13:10 CET 2017

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