Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC100134317 (uncharacterized LOC100134317)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100134317
Atlas_Id 66597
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36311343 and ends at 36312668 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100134317  100134317  uncharacterized LOC100134317
Aliases
GeneCards (Weizmann)LOC100134317
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:36311343-36312668 [Contig_View]  LOC100134317 [Vega]
TCGA cBioPortalLOC100134317
AceView (NCBI)LOC100134317
Genatlas (Paris)LOC100134317
WikiGenes100134317
SOURCE (Princeton)LOC100134317
Genetics Home Reference (NIH)LOC100134317
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100134317  -     chr19:36311343-36312668 +  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100134317  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblLOC100134317 - 19q13.12 [CytoView hg19]  LOC100134317 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBILOC100134317 [Mapview hg19]  LOC100134317 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF289566 AI200879 AL043624 BC045185
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100134317
Cluster EST : UnigeneHs.729610 [ NCBI ]
CGAP (NCI)Hs.729610
Gene ExpressionLOC100134317 [ NCBI-GEO ]   LOC100134317 [ EBI - ARRAY_EXPRESS ]   LOC100134317 [ SEEK ]   LOC100134317 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100134317 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100134317
GTEX Portal (Tissue expression)LOC100134317
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WZ26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WZ26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WZ26
Splice isoforms : SwissVarQ8WZ26
PhosPhoSitePlusQ8WZ26
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100134317
DMDM Disease mutations100134317
Blocks (Seattle)LOC100134317
SuperfamilyQ8WZ26
Peptide AtlasQ8WZ26
IPIIPI00784349   
Protein Interaction databases
DIP (DOE-UCLA)Q8WZ26
IntAct (EBI)Q8WZ26
BioGRIDLOC100134317
STRING (EMBL)LOC100134317
ZODIACLOC100134317
Ontologies - Pathways
QuickGOQ8WZ26
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC100134317
Atlas of Cancer Signalling NetworkLOC100134317
Wikipedia pathwaysLOC100134317
Orthology - Evolution
OrthoDB100134317
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ8WZ26
HOGENOMQ8WZ26
Homologs : HomoloGeneLOC100134317
Homology/Alignments : Family Browser (UCSC)LOC100134317
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC100134317 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC100134317
dbVarLOC100134317
ClinVarLOC100134317
1000_GenomesLOC100134317 
Exome Variant ServerLOC100134317
ExAC (Exome Aggregation Consortium)LOC100134317 (select the gene name)
Genetic variants : HAPMAP100134317
Genomic Variants (DGV)LOC100134317 [DGVbeta]
DECIPHERLOC100134317 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC100134317 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC100134317
DgiDB (Drug Gene Interaction Database)LOC100134317
DoCM (Curated mutations)LOC100134317 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC100134317 (select a term)
intoGenLOC100134317
Cancer3DLOC100134317(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC100134317
Genetic Testing Registry LOC100134317
NextProtQ8WZ26 [Medical]
TSGene100134317
GENETestsLOC100134317
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100134317
BioCentury BCIQLOC100134317
ClinGenLOC100134317
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100134317
Clinical trialLOC100134317
Miscellaneous
canSAR (ICR)LOC100134317 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100134317
EVEXLOC100134317
GoPubMedLOC100134317
iHOPLOC100134317
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:25:37 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.