Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100287632 (selenoprotein K pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100287632
Atlas_Id 66643
Location 6q22.31  [Link to chromosome band 6q22]
Location_base_pair Starts at 118782708 and ends at 118783418 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100287632  100287632  selenoprotein K pseudogene
Aliases
GeneCards (Weizmann)LOC100287632
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:118782708-118783418 [Contig_View]  LOC100287632 [Vega]
TCGA cBioPortalLOC100287632
AceView (NCBI)LOC100287632
Genatlas (Paris)LOC100287632
WikiGenes100287632
SOURCE (Princeton)LOC100287632
Genetics Home Reference (NIH)LOC100287632
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100287632  -     chr6:118782708-118783418 +  6q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100287632  -     6q22.31   [Description]    (hg19-Feb_2009)
EnsemblLOC100287632 - 6q22.31 [CytoView hg19]  LOC100287632 - 6q22.31 [CytoView hg38]
Mapping of homologs : NCBILOC100287632 [Mapview hg19]  LOC100287632 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG207496 BG215992
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100287632
Cluster EST : UnigeneHs.742179 [ NCBI ]
CGAP (NCI)Hs.742179
Gene ExpressionLOC100287632 [ NCBI-GEO ]   LOC100287632 [ EBI - ARRAY_EXPRESS ]   LOC100287632 [ SEEK ]   LOC100287632 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100287632 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100287632
GTEX Portal (Tissue expression)LOC100287632
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100287632
DMDM Disease mutations100287632
Blocks (Seattle)LOC100287632
Protein Interaction databases
BioGRIDLOC100287632
STRING (EMBL)LOC100287632
ZODIACLOC100287632
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100287632
BioCentury BCIQLOC100287632
ClinGenLOC100287632
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287632
Clinical trialLOC100287632
Miscellaneous
canSAR (ICR)LOC100287632 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100287632
EVEXLOC100287632
GoPubMedLOC100287632
iHOPLOC100287632
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:00:08 CEST 2018

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