Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100288254 (uncharacterized LOC100288254)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100288254
Atlas_Id 77016
Location 5q35.1  [Link to chromosome band 5q35]
Location_base_pair Starts at 172285673 and ends at 172298376 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100288254  100288254  uncharacterized LOC100288254
Aliases
GeneCards (Weizmann)LOC100288254
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:172285673-172298376 [Contig_View]  LOC100288254 [Vega]
TCGA cBioPortalLOC100288254
AceView (NCBI)LOC100288254
Genatlas (Paris)LOC100288254
WikiGenes100288254
SOURCE (Princeton)LOC100288254
Genetics Home Reference (NIH)LOC100288254
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100288254  -     chr5:172285673-172298376 +  5q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100288254  -     5q35.1   [Description]    (hg19-Feb_2009)
EnsemblLOC100288254 - 5q35.1 [CytoView hg19]  LOC100288254 - 5q35.1 [CytoView hg38]
Mapping of homologs : NCBILOC100288254 [Mapview hg19]  LOC100288254 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097772 HY040904
RefSeq transcript (Entrez)NM_001007542
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100288254
Cluster EST : UnigeneHs.531911 [ NCBI ]
CGAP (NCI)Hs.531911
Gene ExpressionLOC100288254 [ NCBI-GEO ]   LOC100288254 [ EBI - ARRAY_EXPRESS ]   LOC100288254 [ SEEK ]   LOC100288254 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100288254 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100288254
GTEX Portal (Tissue expression)LOC100288254
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100288254
DMDM Disease mutations100288254
Blocks (Seattle)LOC100288254
IPIIPI00167272   
Protein Interaction databases
BioGRIDLOC100288254
STRING (EMBL)LOC100288254
ZODIACLOC100288254
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100288254
BioCentury BCIQLOC100288254
ClinGenLOC100288254
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100288254
Clinical trialLOC100288254
Miscellaneous
canSAR (ICR)LOC100288254 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100288254
EVEXLOC100288254
GoPubMedLOC100288254
iHOPLOC100288254
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:48:06 CET 2017

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