Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100288590 (cutaneous T-cell lymphoma-associated antigen 1 pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100288590
Atlas_Id 51921
Location 21q22.13  [Link to chromosome band 21q22]
Location_base_pair Starts at 38204141 and ends at 38206080 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100288590  100288590  cutaneous T-cell lymphoma-associated antigen 1 pseudogene
Aliases
GeneCards (Weizmann)LOC100288590
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:38204141-38206080 [Contig_View]  LOC100288590 [Vega]
TCGA cBioPortalLOC100288590
AceView (NCBI)LOC100288590
Genatlas (Paris)LOC100288590
WikiGenes100288590
SOURCE (Princeton)LOC100288590
Genetics Home Reference (NIH)LOC100288590
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100288590  -     chr21:38204141-38206080 -  21q22.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100288590  -     21q22.13   [Description]    (hg19-Feb_2009)
EnsemblLOC100288590 - 21q22.13 [CytoView hg19]  LOC100288590 - 21q22.13 [CytoView hg38]
Mapping of homologs : NCBILOC100288590 [Mapview hg19]  LOC100288590 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC036237
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100288590
Cluster EST : UnigeneHs.385813 [ NCBI ]
CGAP (NCI)Hs.385813
Gene ExpressionLOC100288590 [ NCBI-GEO ]   LOC100288590 [ EBI - ARRAY_EXPRESS ]   LOC100288590 [ SEEK ]   LOC100288590 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100288590 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100288590
GTEX Portal (Tissue expression)LOC100288590
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100288590
DMDM Disease mutations100288590
Blocks (Seattle)LOC100288590
Protein Interaction databases
BioGRIDLOC100288590
STRING (EMBL)LOC100288590
ZODIACLOC100288590
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100288590
BioCentury BCIQLOC100288590
ClinGenLOC100288590
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100288590
Clinical trialLOC100288590
Miscellaneous
canSAR (ICR)LOC100288590 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100288590
EVEXLOC100288590
GoPubMedLOC100288590
iHOPLOC100288590
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:57:53 CEST 2017

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