Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100288842 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100288842
Atlas_Id 66683
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 120793497 and ends at 120798731 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100288842  100288842  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 pseudogene
Aliases
GeneCards (Weizmann)LOC100288842
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:120793497-120798731 [Contig_View]  LOC100288842 [Vega]
TCGA cBioPortalLOC100288842
AceView (NCBI)LOC100288842
Genatlas (Paris)LOC100288842
WikiGenes100288842
SOURCE (Princeton)LOC100288842
Genetics Home Reference (NIH)LOC100288842
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100288842  -     chr9:120793497-120798731 +  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100288842  -     9q33.2   [Description]    (hg19-Feb_2009)
EnsemblLOC100288842 - 9q33.2 [CytoView hg19]  LOC100288842 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBILOC100288842 [Mapview hg19]  LOC100288842 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL599456 BP872636 BP872983
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100288842
Cluster EST : UnigeneHs.706815 [ NCBI ]
CGAP (NCI)Hs.706815
Gene ExpressionLOC100288842 [ NCBI-GEO ]   LOC100288842 [ EBI - ARRAY_EXPRESS ]   LOC100288842 [ SEEK ]   LOC100288842 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100288842 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100288842
GTEX Portal (Tissue expression)LOC100288842
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100288842
DMDM Disease mutations100288842
Blocks (Seattle)LOC100288842
IPIIPI00888770   
Protein Interaction databases
BioGRIDLOC100288842
STRING (EMBL)LOC100288842
ZODIACLOC100288842
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100288842
BioCentury BCIQLOC100288842
ClinGenLOC100288842
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100288842
Clinical trialLOC100288842
Miscellaneous
canSAR (ICR)LOC100288842 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100288842
EVEXLOC100288842
GoPubMedLOC100288842
iHOPLOC100288842
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:48:09 CET 2017

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