Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100289473 (cytoskeleton associated protein 2-like pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100289473
Atlas_Id 66705
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 1773365 and ends at 1779746 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100289473  100289473  cytoskeleton associated protein 2-like pseudogene
Aliases
GeneCards (Weizmann)LOC100289473
Ensembl hg19 (Hinxton)ENSG00000232528 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232528 [Gene_View]  chr20:1773365-1779746 [Contig_View]  LOC100289473 [Vega]
ICGC DataPortalENSG00000232528
TCGA cBioPortalLOC100289473
AceView (NCBI)LOC100289473
Genatlas (Paris)LOC100289473
WikiGenes100289473
SOURCE (Princeton)LOC100289473
Genetics Home Reference (NIH)LOC100289473
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100289473  -     chr20:1773365-1779746 -  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100289473  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblLOC100289473 - 20p13 [CytoView hg19]  LOC100289473 - 20p13 [CytoView hg38]
Mapping of homologs : NCBILOC100289473 [Mapview hg19]  LOC100289473 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DY655423
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100289473
Cluster EST : UnigeneHs.641525 [ NCBI ]
CGAP (NCI)Hs.641525
Alternative Splicing GalleryENSG00000232528
Gene ExpressionLOC100289473 [ NCBI-GEO ]   LOC100289473 [ EBI - ARRAY_EXPRESS ]   LOC100289473 [ SEEK ]   LOC100289473 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100289473 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100289473
GTEX Portal (Tissue expression)LOC100289473
Human Protein AtlasENSG00000232528-LOC100289473 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100289473
DMDM Disease mutations100289473
Blocks (Seattle)LOC100289473
Human Protein Atlas [tissue]ENSG00000232528-LOC100289473 [tissue]
Protein Interaction databases
FunCoupENSG00000232528
BioGRIDLOC100289473
STRING (EMBL)LOC100289473
ZODIACLOC100289473
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100289473
BioCentury BCIQLOC100289473
ClinGenLOC100289473
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100289473
Clinical trialLOC100289473
Miscellaneous
canSAR (ICR)LOC100289473 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100289473
EVEXLOC100289473
GoPubMedLOC100289473
iHOPLOC100289473
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:48:14 CET 2017

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