Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC100335030 (FGFR1 oncogene partner 2 pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100335030
Atlas_Id 51877
Location 12q13.12  [Link to chromosome band 12q13]
Location_base_pair Starts at 49389174 and ends at 49392333 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100335030  100335030  FGFR1 oncogene partner 2 pseudogene
Aliases
GeneCards (Weizmann)LOC100335030
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr12:49389174-49392333 [Contig_View]  LOC100335030 [Vega]
TCGA cBioPortalLOC100335030
AceView (NCBI)LOC100335030
Genatlas (Paris)LOC100335030
WikiGenes100335030
SOURCE (Princeton)LOC100335030
Genetics Home Reference (NIH)LOC100335030
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100335030  -     chr12:49389174-49392333 +  12q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100335030  -     12q13.12   [Description]    (hg19-Feb_2009)
EnsemblLOC100335030 - 12q13.12 [CytoView hg19]  LOC100335030 - 12q13.12 [CytoView hg38]
Mapping of homologs : NCBILOC100335030 [Mapview hg19]  LOC100335030 [Mapview hg38]
Gene and transcription
Genbank (Entrez)EC452298
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100335030
Cluster EST : UnigeneHs.687044 [ NCBI ]
CGAP (NCI)Hs.687044
Gene ExpressionLOC100335030 [ NCBI-GEO ]   LOC100335030 [ EBI - ARRAY_EXPRESS ]   LOC100335030 [ SEEK ]   LOC100335030 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100335030 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100335030
GTEX Portal (Tissue expression)LOC100335030
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100335030
DMDM Disease mutations100335030
Blocks (Seattle)LOC100335030
Protein Interaction databases
BioGRIDLOC100335030
STRING (EMBL)LOC100335030
ZODIACLOC100335030
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100335030
BioCentury BCIQLOC100335030
ClinGenLOC100335030
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100335030
Clinical trialLOC100335030
Miscellaneous
canSAR (ICR)LOC100335030 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100335030
EVEXLOC100335030
GoPubMedLOC100335030
iHOPLOC100335030
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:17:09 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.