Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100422212 (eukaryotic translation initiation factor 3 subunit J pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100422212
Atlas_Id 66727
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 163421070 and ends at 163423191 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100422212  100422212  eukaryotic translation initiation factor 3 subunit J pseudogene
Aliases
GeneCards (Weizmann)LOC100422212
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:163421070-163423191 [Contig_View]  LOC100422212 [Vega]
TCGA cBioPortalLOC100422212
AceView (NCBI)LOC100422212
Genatlas (Paris)LOC100422212
WikiGenes100422212
SOURCE (Princeton)LOC100422212
Genetics Home Reference (NIH)LOC100422212
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100422212  -     chr1:163421070-163423191 -  1q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100422212  -     1q23.3   [Description]    (hg19-Feb_2009)
EnsemblLOC100422212 - 1q23.3 [CytoView hg19]  LOC100422212 - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBILOC100422212 [Mapview hg19]  LOC100422212 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC036607 BC047397
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100422212
Cluster EST : UnigeneHs.556898 [ NCBI ]
CGAP (NCI)Hs.556898
Gene ExpressionLOC100422212 [ NCBI-GEO ]   LOC100422212 [ EBI - ARRAY_EXPRESS ]   LOC100422212 [ SEEK ]   LOC100422212 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100422212 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100422212
GTEX Portal (Tissue expression)LOC100422212
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100422212
DMDM Disease mutations100422212
Blocks (Seattle)LOC100422212
Protein Interaction databases
BioGRIDLOC100422212
STRING (EMBL)LOC100422212
ZODIACLOC100422212
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100422212
BioCentury BCIQLOC100422212
ClinGenLOC100422212
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100422212
Clinical trialLOC100422212
Miscellaneous
canSAR (ICR)LOC100422212 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100422212
EVEXLOC100422212
GoPubMedLOC100422212
iHOPLOC100422212
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:48:21 CET 2017

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