Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100499484 (SUGT1-1300002K09Rik pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100499484
Atlas_Id 66732
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 97238426 and ends at 97297314 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100499484  100499484  SUGT1-1300002K09Rik pseudogene
Aliases
GeneCards (Weizmann)LOC100499484
Ensembl hg19 (Hinxton)ENSG00000254876 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254876 [Gene_View]  chr9:97238426-97297314 [Contig_View]  LOC100499484 [Vega]
ICGC DataPortalENSG00000254876
TCGA cBioPortalLOC100499484
AceView (NCBI)LOC100499484
Genatlas (Paris)LOC100499484
WikiGenes100499484
SOURCE (Princeton)LOC100499484
Genetics Home Reference (NIH)LOC100499484
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100499484  -     chr9:97238426-97297314 +  9q22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100499484  -     9q22.33   [Description]    (hg19-Feb_2009)
EnsemblLOC100499484 - 9q22.33 [CytoView hg19]  LOC100499484 - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBILOC100499484 [Mapview hg19]  LOC100499484 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK301827 AK303497 DA153387
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100499484
Cluster EST : UnigeneHs.435629 [ NCBI ]
CGAP (NCI)Hs.435629
Alternative Splicing GalleryENSG00000254876
Gene ExpressionLOC100499484 [ NCBI-GEO ]   LOC100499484 [ EBI - ARRAY_EXPRESS ]   LOC100499484 [ SEEK ]   LOC100499484 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100499484 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100499484
GTEX Portal (Tissue expression)LOC100499484
Human Protein AtlasENSG00000254876-LOC100499484 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100499484
DMDM Disease mutations100499484
Blocks (Seattle)LOC100499484
Human Protein Atlas [tissue]ENSG00000254876-LOC100499484 [tissue]
Protein Interaction databases
FunCoupENSG00000254876
BioGRIDLOC100499484
STRING (EMBL)LOC100499484
ZODIACLOC100499484
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100499484
BioCentury BCIQLOC100499484
ClinGenLOC100499484
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100499484
Clinical trialLOC100499484
Miscellaneous
canSAR (ICR)LOC100499484 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100499484
EVEXLOC100499484
GoPubMedLOC100499484
iHOPLOC100499484
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:01:36 CET 2017

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