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LOC100505502 (putative UPF0607 protein FLJ37424)

Identity

Alias (NCBI)-
HGNC (Hugo) -
LocusID (NCBI) 100505502
Atlas_Id 66737
Location 10p11.22  [Link to chromosome band 10p11]
Location_base_pair Starts at 31361427 and ends at 31399755 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100505502    putative UPF0607 protein FLJ37424
Aliases
GeneCards (Weizmann)LOC100505502
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr10:31361427-31399755 [Contig_View]  LOC100505502 [Vega]
TCGA cBioPortalLOC100505502
AceView (NCBI)LOC100505502
Genatlas (Paris)LOC100505502
SOURCE (Princeton)LOC100505502
Genetics Home Reference (NIH)LOC100505502
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100505502  -     chr10:31361427-31399755 -  10p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100505502  -     10p11.22   [Description]    (hg19-Feb_2009)
GoldenPathLOC100505502 - 10p11.22 [CytoView hg19]  LOC100505502 - 10p11.22 [CytoView hg38]
Genome Data Viewer NCBILOC100505502 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK094743
RefSeq transcript (Entrez)NM_001368169
Consensus coding sequences : CCDS (NCBI)LOC100505502
Gene ExpressionLOC100505502 [ NCBI-GEO ]   LOC100505502 [ EBI - ARRAY_EXPRESS ]   LOC100505502 [ SEEK ]   LOC100505502 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100505502 [ Firebrowse - Broad ]
GenevisibleExpression of LOC100505502 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100505502
GTEX Portal (Tissue expression)LOC100505502
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9G6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9G6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9G6
PhosPhoSitePlusQ8N9G6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100505502
SuperfamilyQ8N9G6
AlphaFold pdb e-kbQ8N9G6   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9G6
IntAct (EBI)Q8N9G6
BioGRIDLOC100505502
STRING (EMBL)LOC100505502
ZODIACLOC100505502
Ontologies - Pathways
QuickGOQ8N9G6
Ontology : AmiGOcalcium ion binding  extracellular space  cytoplasm  calcium-dependent protein binding  
Ontology : EGO-EBIcalcium ion binding  extracellular space  cytoplasm  calcium-dependent protein binding  
NDEx NetworkLOC100505502
Atlas of Cancer Signalling NetworkLOC100505502
Wikipedia pathwaysLOC100505502
Orthology - Evolution
OrthoDB100505502
Phylogenetic Trees/Animal Genes : TreeFam-
Homologs : HomoloGeneLOC100505502
Homology/Alignments : Family Browser (UCSC)LOC100505502
Gene fusions - Rearrangements
Fusion : QuiverLOC100505502
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC100505502 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC100505502
dbVarLOC100505502
ClinVarLOC100505502
Monarch-
1000_GenomesLOC100505502 
Exome Variant ServerLOC100505502
Varsome BrowserLOC100505502
ACMGLOC100505502 variants
VarityQ8N9G6
Genomic Variants (DGV)LOC100505502 [DGVbeta]
DECIPHERLOC100505502 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC100505502 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaLOC100505502
DgiDB (Drug Gene Interaction Database)LOC100505502
DoCM (Curated mutations)LOC100505502
CIViC (Clinical Interpretations of Variants in Cancer)LOC100505502
Cancer3DLOC100505502
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLOC100505502
MedgenLOC100505502
Genetic Testing Registry LOC100505502
NextProtQ8N9G6 [Medical]
GENETestsLOC100505502
Target ValidationLOC100505502
Huge Navigator LOC100505502 [HugePedia]
ClinGenLOC100505502
Clinical trials, drugs, therapy
MyCancerGenomeLOC100505502
Protein Interactions : CTDLOC100505502
PharosQ8N9G6
Clinical trialLOC100505502
Miscellaneous
canSAR (ICR)LOC100505502
HarmonizomeLOC100505502
DataMed IndexLOC100505502
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLOC100505502
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:01:38 CEST 2021

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