Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100505502 (putative UPF0607 protein FLJ37424)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100505502
Atlas_Id 66737
Location 10p11.22  [Link to chromosome band 10p11]
Location_base_pair Starts at 31361427 and ends at 31399755 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100505502  100505502  putative UPF0607 protein FLJ37424
Aliases
GeneCards (Weizmann)LOC100505502
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:31361427-31399755 [Contig_View]  LOC100505502 [Vega]
TCGA cBioPortalLOC100505502
AceView (NCBI)LOC100505502
Genatlas (Paris)LOC100505502
WikiGenes100505502
SOURCE (Princeton)LOC100505502
Genetics Home Reference (NIH)LOC100505502
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100505502  -     chr10:31361427-31399755 -  10p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100505502  -     10p11.22   [Description]    (hg19-Feb_2009)
EnsemblLOC100505502 - 10p11.22 [CytoView hg19]  LOC100505502 - 10p11.22 [CytoView hg38]
Mapping of homologs : NCBILOC100505502 [Mapview hg19]  LOC100505502 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094743
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100505502
Cluster EST : UnigeneHs.730227 [ NCBI ]
CGAP (NCI)Hs.730227
Gene ExpressionLOC100505502 [ NCBI-GEO ]   LOC100505502 [ EBI - ARRAY_EXPRESS ]   LOC100505502 [ SEEK ]   LOC100505502 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100505502 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100505502
GTEX Portal (Tissue expression)LOC100505502
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9G6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9G6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9G6
Splice isoforms : SwissVarQ8N9G6
PhosPhoSitePlusQ8N9G6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100505502
DMDM Disease mutations100505502
Blocks (Seattle)LOC100505502
SuperfamilyQ8N9G6
Peptide AtlasQ8N9G6
IPIIPI00167716   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9G6
IntAct (EBI)Q8N9G6
BioGRIDLOC100505502
STRING (EMBL)LOC100505502
ZODIACLOC100505502
Ontologies - Pathways
QuickGOQ8N9G6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC100505502
Atlas of Cancer Signalling NetworkLOC100505502
Wikipedia pathwaysLOC100505502
Orthology - Evolution
OrthoDB100505502
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ8N9G6
HOGENOMQ8N9G6
Homologs : HomoloGeneLOC100505502
Homology/Alignments : Family Browser (UCSC)LOC100505502
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC100505502 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC100505502
dbVarLOC100505502
ClinVarLOC100505502
1000_GenomesLOC100505502 
Exome Variant ServerLOC100505502
ExAC (Exome Aggregation Consortium)LOC100505502 (select the gene name)
Genetic variants : HAPMAP100505502
Genomic Variants (DGV)LOC100505502 [DGVbeta]
DECIPHERLOC100505502 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC100505502 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC100505502
DgiDB (Drug Gene Interaction Database)LOC100505502
DoCM (Curated mutations)LOC100505502 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC100505502 (select a term)
intoGenLOC100505502
Cancer3DLOC100505502(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC100505502
Genetic Testing Registry LOC100505502
NextProtQ8N9G6 [Medical]
TSGene100505502
GENETestsLOC100505502
Target ValidationLOC100505502
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100505502
BioCentury BCIQLOC100505502
ClinGenLOC100505502
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505502
Clinical trialLOC100505502
Miscellaneous
canSAR (ICR)LOC100505502 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100505502
EVEXLOC100505502
GoPubMedLOC100505502
iHOPLOC100505502
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 16:02:17 CEST 2017

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