Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100505530 (uncharacterized LOC100505530)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100505530
Atlas_Id 66739
Location 6p21.2  [Link to chromosome band 6p21]
Location_base_pair Starts at 37507348 and ends at 37541390 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100505530  100505530  uncharacterized LOC100505530
Aliases
GeneCards (Weizmann)LOC100505530
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:37507348-37541390 [Contig_View]  LOC100505530 [Vega]
TCGA cBioPortalLOC100505530
AceView (NCBI)LOC100505530
Genatlas (Paris)LOC100505530
WikiGenes100505530
SOURCE (Princeton)LOC100505530
Genetics Home Reference (NIH)LOC100505530
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100505530  -     chr6:37507348-37541390 +  6p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100505530  -     6p21.2   [Description]    (hg19-Feb_2009)
EnsemblLOC100505530 - 6p21.2 [CytoView hg19]  LOC100505530 - 6p21.2 [CytoView hg38]
Mapping of homologs : NCBILOC100505530 [Mapview hg19]  LOC100505530 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127725 BQ002426
RefSeq transcript (Entrez)NM_001039791
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100505530
Cluster EST : UnigeneHs.582978 [ NCBI ]
CGAP (NCI)Hs.582978
Gene ExpressionLOC100505530 [ NCBI-GEO ]   LOC100505530 [ EBI - ARRAY_EXPRESS ]   LOC100505530 [ SEEK ]   LOC100505530 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100505530 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100505530
GTEX Portal (Tissue expression)LOC100505530
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZS52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZS52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZS52
Splice isoforms : SwissVarQ6ZS52
PhosPhoSitePlusQ6ZS52
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100505530
DMDM Disease mutations100505530
Blocks (Seattle)LOC100505530
SuperfamilyQ6ZS52
Peptide AtlasQ6ZS52
Protein Interaction databases
DIP (DOE-UCLA)Q6ZS52
IntAct (EBI)Q6ZS52
BioGRIDLOC100505530
STRING (EMBL)LOC100505530
ZODIACLOC100505530
Ontologies - Pathways
QuickGOQ6ZS52
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC100505530
Atlas of Cancer Signalling NetworkLOC100505530
Wikipedia pathwaysLOC100505530
Orthology - Evolution
OrthoDB100505530
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZS52
HOGENOMQ6ZS52
Homologs : HomoloGeneLOC100505530
Homology/Alignments : Family Browser (UCSC)LOC100505530
Gene fusions - Rearrangements
Fusion : QuiverLOC100505530
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC100505530 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC100505530
dbVarLOC100505530
ClinVarLOC100505530
1000_GenomesLOC100505530 
Exome Variant ServerLOC100505530
Varsome BrowserLOC100505530
Genetic variants : HAPMAP100505530
Genomic Variants (DGV)LOC100505530 [DGVbeta]
DECIPHERLOC100505530 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC100505530 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC100505530
DgiDB (Drug Gene Interaction Database)LOC100505530
DoCM (Curated mutations)LOC100505530 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC100505530 (select a term)
intoGenLOC100505530
Cancer3DLOC100505530(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLOC100505530
MedgenLOC100505530
Genetic Testing Registry LOC100505530
NextProtQ6ZS52 [Medical]
TSGene100505530
GENETestsLOC100505530
Target ValidationLOC100505530
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100505530
BioCentury BCIQLOC100505530
ClinGenLOC100505530
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505530
Clinical trialLOC100505530
Miscellaneous
canSAR (ICR)LOC100505530 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100505530
EVEXLOC100505530
GoPubMedLOC100505530
iHOPLOC100505530
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:00:32 CEST 2018

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