Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100506127 (putative uncharacterized protein FLJ37770-like)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100506127
Atlas_Id 66785
Location 11q13.5  [Link to chromosome band 11q13]
Location_base_pair Starts at 76381303 and ends at 76408131 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100506127  100506127  putative uncharacterized protein FLJ37770-like
Aliases
GeneCards (Weizmann)LOC100506127
Ensembl hg19 (Hinxton)ENSG00000179240 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179240 [Gene_View]  chr11:76381303-76408131 [Contig_View]  LOC100506127 [Vega]
ICGC DataPortalENSG00000179240
TCGA cBioPortalLOC100506127
AceView (NCBI)LOC100506127
Genatlas (Paris)LOC100506127
WikiGenes100506127
SOURCE (Princeton)LOC100506127
Genetics Home Reference (NIH)LOC100506127
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100506127  -     chr11:76381303-76408131 +  11q13.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100506127  -     11q13.5   [Description]    (hg19-Feb_2009)
EnsemblLOC100506127 - 11q13.5 [CytoView hg19]  LOC100506127 - 11q13.5 [CytoView hg38]
Mapping of homologs : NCBILOC100506127 [Mapview hg19]  LOC100506127 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI289296 AK054952 AK095089 AK125821 BC040665
RefSeq transcript (Entrez)NM_001013634 NM_001282456 NM_001305225 NM_001347884 NM_001347885
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100506127
Cluster EST : UnigeneHs.734014 [ NCBI ]
CGAP (NCI)Hs.734014
Alternative Splicing GalleryENSG00000179240
Gene ExpressionLOC100506127 [ NCBI-GEO ]   LOC100506127 [ EBI - ARRAY_EXPRESS ]   LOC100506127 [ SEEK ]   LOC100506127 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100506127 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506127
GTEX Portal (Tissue expression)LOC100506127
Human Protein AtlasENSG00000179240-LOC100506127 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3ZCU0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3ZCU0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3ZCU0
Splice isoforms : SwissVarQ3ZCU0
PhosPhoSitePlusQ3ZCU0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100506127
DMDM Disease mutations100506127
Blocks (Seattle)LOC100506127
SuperfamilyQ3ZCU0
Human Protein Atlas [tissue]ENSG00000179240-LOC100506127 [tissue]
Peptide AtlasQ3ZCU0
IPIIPI00651646   IPI00759461   IPI00982269   
Protein Interaction databases
DIP (DOE-UCLA)Q3ZCU0
IntAct (EBI)Q3ZCU0
FunCoupENSG00000179240
BioGRIDLOC100506127
STRING (EMBL)LOC100506127
ZODIACLOC100506127
Ontologies - Pathways
QuickGOQ3ZCU0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC100506127
Atlas of Cancer Signalling NetworkLOC100506127
Wikipedia pathwaysLOC100506127
Orthology - Evolution
OrthoDB100506127
GeneTree (enSembl)ENSG00000179240
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ3ZCU0
HOGENOMQ3ZCU0
Homologs : HomoloGeneLOC100506127
Homology/Alignments : Family Browser (UCSC)LOC100506127
Gene fusions - Rearrangements
Tumor Fusion PortalLOC100506127
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC100506127 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC100506127
dbVarLOC100506127
ClinVarLOC100506127
1000_GenomesLOC100506127 
Exome Variant ServerLOC100506127
ExAC (Exome Aggregation Consortium)ENSG00000179240
GNOMAD BrowserENSG00000179240
Genetic variants : HAPMAP100506127
Genomic Variants (DGV)LOC100506127 [DGVbeta]
DECIPHERLOC100506127 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC100506127 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC100506127
DgiDB (Drug Gene Interaction Database)LOC100506127
DoCM (Curated mutations)LOC100506127 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC100506127 (select a term)
intoGenLOC100506127
Cancer3DLOC100506127(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLOC100506127
MedgenLOC100506127
Genetic Testing Registry LOC100506127
NextProtQ3ZCU0 [Medical]
TSGene100506127
GENETestsLOC100506127
Target ValidationLOC100506127
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100506127
BioCentury BCIQLOC100506127
ClinGenLOC100506127
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506127
Clinical trialLOC100506127
Miscellaneous
canSAR (ICR)LOC100506127 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100506127
EVEXLOC100506127
GoPubMedLOC100506127
iHOPLOC100506127
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:48:36 CET 2017

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