Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100506422 (putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100506422
Atlas_Id 66815
Location 9p21.2  [Link to chromosome band 9p21]
Location_base_pair Starts at 26066675 and ends at 26118408 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100506422  100506422  putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323
Aliases
GeneCards (Weizmann)LOC100506422
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:26066675-26118408 [Contig_View]  LOC100506422 [Vega]
TCGA cBioPortalLOC100506422
AceView (NCBI)LOC100506422
Genatlas (Paris)LOC100506422
WikiGenes100506422
SOURCE (Princeton)LOC100506422
Genetics Home Reference (NIH)LOC100506422
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100506422  -     chr9:26066675-26118408 +  9p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100506422  -     9p21.2   [Description]    (hg19-Feb_2009)
EnsemblLOC100506422 - 9p21.2 [CytoView hg19]  LOC100506422 - 9p21.2 [CytoView hg38]
Mapping of homologs : NCBILOC100506422 [Mapview hg19]  LOC100506422 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131322
RefSeq transcript (Entrez)NM_001004352
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100506422
Cluster EST : UnigeneHs.533221 [ NCBI ]
CGAP (NCI)Hs.533221
Gene ExpressionLOC100506422 [ NCBI-GEO ]   LOC100506422 [ EBI - ARRAY_EXPRESS ]   LOC100506422 [ SEEK ]   LOC100506422 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100506422 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506422
GTEX Portal (Tissue expression)LOC100506422
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZN92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZN92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZN92
Splice isoforms : SwissVarQ6ZN92
PhosPhoSitePlusQ6ZN92
Domains : Interpro (EBI)dUTPase-like    dUTPase/dCTP_deaminase   
Domain families : Pfam (Sanger)dUTPase (PF00692)   
Domain families : Pfam (NCBI)pfam00692   
Conserved Domain (NCBI)LOC100506422
DMDM Disease mutations100506422
Blocks (Seattle)LOC100506422
SuperfamilyQ6ZN92
Peptide AtlasQ6ZN92
IPIIPI00442226   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZN92
IntAct (EBI)Q6ZN92
BioGRIDLOC100506422
STRING (EMBL)LOC100506422
ZODIACLOC100506422
Ontologies - Pathways
QuickGOQ6ZN92
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC100506422
Atlas of Cancer Signalling NetworkLOC100506422
Wikipedia pathwaysLOC100506422
Orthology - Evolution
OrthoDB100506422
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZN92
HOGENOMQ6ZN92
Homologs : HomoloGeneLOC100506422
Homology/Alignments : Family Browser (UCSC)LOC100506422
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC100506422 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC100506422
dbVarLOC100506422
ClinVarLOC100506422
1000_GenomesLOC100506422 
Exome Variant ServerLOC100506422
ExAC (Exome Aggregation Consortium)LOC100506422 (select the gene name)
Genetic variants : HAPMAP100506422
Genomic Variants (DGV)LOC100506422 [DGVbeta]
DECIPHERLOC100506422 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC100506422 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC100506422
DgiDB (Drug Gene Interaction Database)LOC100506422
DoCM (Curated mutations)LOC100506422 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC100506422 (select a term)
intoGenLOC100506422
Cancer3DLOC100506422(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC100506422
Genetic Testing Registry LOC100506422
NextProtQ6ZN92 [Medical]
TSGene100506422
GENETestsLOC100506422
Target ValidationLOC100506422
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100506422
BioCentury BCIQLOC100506422
ClinGenLOC100506422
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506422
Clinical trialLOC100506422
Miscellaneous
canSAR (ICR)LOC100506422 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100506422
EVEXLOC100506422
GoPubMedLOC100506422
iHOPLOC100506422
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 16:02:40 CEST 2017

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