Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100506688 (uncharacterized LOC100506688)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100506688
Atlas_Id 66841
Location 5_KI270792v1_alt  [Link to chromosome band 5]
Location_base_pair Starts at 5687 and ends at 15815 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100506688  100506688  uncharacterized LOC100506688
Aliases
GeneCards (Weizmann)LOC100506688
Ensembl hg19 (Hinxton)ENSG00000215246 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215246 [Gene_View]  chr5_KI270792v1_alt:5687-15815 [Contig_View]  LOC100506688 [Vega]
ICGC DataPortalENSG00000215246
TCGA cBioPortalLOC100506688
AceView (NCBI)LOC100506688
Genatlas (Paris)LOC100506688
WikiGenes100506688
SOURCE (Princeton)LOC100506688
Genetics Home Reference (NIH)LOC100506688
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100506688  -     chr5_KI270792v1_alt:5687-15815 -  5_KI270792v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100506688  -     5_KI270792v1_alt   [Description]    (hg19-Feb_2009)
EnsemblLOC100506688 - 5_KI270792v1_alt [CytoView hg19]  LOC100506688 - 5_KI270792v1_alt [CytoView hg38]
Mapping of homologs : NCBILOC100506688 [Mapview hg19]  LOC100506688 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126199 AK127451 DB146870 DB164120
RefSeq transcript (Entrez)NM_001242737
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_187548
Consensus coding sequences : CCDS (NCBI)LOC100506688
Cluster EST : UnigeneHs.532063 [ NCBI ]
CGAP (NCI)Hs.532063
Alternative Splicing GalleryENSG00000215246
Gene ExpressionLOC100506688 [ NCBI-GEO ]   LOC100506688 [ EBI - ARRAY_EXPRESS ]   LOC100506688 [ SEEK ]   LOC100506688 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100506688 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506688
GTEX Portal (Tissue expression)LOC100506688
Human Protein AtlasENSG00000215246-LOC100506688 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100506688
DMDM Disease mutations100506688
Blocks (Seattle)LOC100506688
Human Protein Atlas [tissue]ENSG00000215246-LOC100506688 [tissue]
IPIIPI00445314   
Protein Interaction databases
FunCoupENSG00000215246
BioGRIDLOC100506688
STRING (EMBL)LOC100506688
ZODIACLOC100506688
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100506688
BioCentury BCIQLOC100506688
ClinGenLOC100506688
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506688
Clinical trialLOC100506688
Miscellaneous
canSAR (ICR)LOC100506688 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100506688
EVEXLOC100506688
GoPubMedLOC100506688
iHOPLOC100506688
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:02:02 CET 2017

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