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LOC100996716 (vesicle-trafficking protein SEC22b)

Identity

Other aliasCH17-189H20.1
HGNC (Hugo) -
LocusID (NCBI) 100996716
Atlas_Id 78721
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 149175750 and ends at 149251064 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100996716  100996716  vesicle-trafficking protein SEC22b
AliasesCH17-189H20.1
GeneCards (Weizmann)LOC100996716
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:149175750-149251064 [Contig_View]  LOC100996716 [Vega]
TCGA cBioPortalLOC100996716
AceView (NCBI)LOC100996716
Genatlas (Paris)LOC100996716
WikiGenes100996716
SOURCE (Princeton)LOC100996716
Genetics Home Reference (NIH)LOC100996716
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100996716  -     chr1:149175750-149251064 +  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100996716  -     1q21.2   [Description]    (hg19-Feb_2009)
EnsemblLOC100996716 - 1q21.2 [CytoView hg19]  LOC100996716 - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBILOC100996716 [Mapview hg19]  LOC100996716 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC047032 BC099898
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100996716
Cluster EST : UnigeneHs.658982 [ NCBI ]
CGAP (NCI)Hs.658982
Gene ExpressionLOC100996716 [ NCBI-GEO ]   LOC100996716 [ EBI - ARRAY_EXPRESS ]   LOC100996716 [ SEEK ]   LOC100996716 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100996716 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100996716
GTEX Portal (Tissue expression)LOC100996716
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100996716
DMDM Disease mutations100996716
Blocks (Seattle)LOC100996716
Protein Interaction databases
BioGRIDLOC100996716
STRING (EMBL)LOC100996716
ZODIACLOC100996716
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100996716
BioCentury BCIQLOC100996716
ClinGenLOC100996716
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100996716
Clinical trialLOC100996716
Miscellaneous
canSAR (ICR)LOC100996716 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100996716
EVEXLOC100996716
GoPubMedLOC100996716
iHOPLOC100996716
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:02:36 CET 2017

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