Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC100996741 (uncharacterized LOC100996741)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100996741
Atlas_Id 79085
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 145164099 and ends at 145167488 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100996741  100996741  uncharacterized LOC100996741
Aliases
GeneCards (Weizmann)LOC100996741
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:145164099-145167488 [Contig_View]  LOC100996741 [Vega]
TCGA cBioPortalLOC100996741
AceView (NCBI)LOC100996741
Genatlas (Paris)LOC100996741
WikiGenes100996741
SOURCE (Princeton)LOC100996741
Genetics Home Reference (NIH)LOC100996741
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100996741  -     chr1:145164099-145167488 -  1q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100996741  -     1q21.1   [Description]    (hg19-Feb_2009)
EnsemblLOC100996741 - 1q21.1 [CytoView hg19]  LOC100996741 - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBILOC100996741 [Mapview hg19]  LOC100996741 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123662 AK124550 BC023516 BC136705 BC141801
RefSeq transcript (Entrez)NM_001348152
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100996741
Cluster EST : UnigeneHs.728022 [ NCBI ]
CGAP (NCI)Hs.728022
Gene ExpressionLOC100996741 [ NCBI-GEO ]   LOC100996741 [ EBI - ARRAY_EXPRESS ]   LOC100996741 [ SEEK ]   LOC100996741 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100996741 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100996741
GTEX Portal (Tissue expression)LOC100996741
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZW35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZW35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZW35
Splice isoforms : SwissVarQ6ZW35
PhosPhoSitePlusQ6ZW35
Domains : Interpro (EBI)DUF4741   
Domain families : Pfam (Sanger)DUF4741 (PF15897)   
Domain families : Pfam (NCBI)pfam15897   
Conserved Domain (NCBI)LOC100996741
DMDM Disease mutations100996741
Blocks (Seattle)LOC100996741
SuperfamilyQ6ZW35
Peptide AtlasQ6ZW35
Protein Interaction databases
DIP (DOE-UCLA)Q6ZW35
IntAct (EBI)Q6ZW35
BioGRIDLOC100996741
STRING (EMBL)LOC100996741
ZODIACLOC100996741
Ontologies - Pathways
QuickGOQ6ZW35
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC100996741
Atlas of Cancer Signalling NetworkLOC100996741
Wikipedia pathwaysLOC100996741
Orthology - Evolution
OrthoDB100996741
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZW35
HOGENOMQ6ZW35
Homologs : HomoloGeneLOC100996741
Homology/Alignments : Family Browser (UCSC)LOC100996741
Gene fusions - Rearrangements
Tumor Fusion PortalLOC100996741
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC100996741 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC100996741
dbVarLOC100996741
ClinVarLOC100996741
1000_GenomesLOC100996741 
Exome Variant ServerLOC100996741
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP100996741
Genomic Variants (DGV)LOC100996741 [DGVbeta]
DECIPHERLOC100996741 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC100996741 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LOC100996741
DgiDB (Drug Gene Interaction Database)LOC100996741
DoCM (Curated mutations)LOC100996741 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC100996741 (select a term)
intoGenLOC100996741
Cancer3DLOC100996741(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLOC100996741
MedgenLOC100996741
Genetic Testing Registry LOC100996741
NextProtQ6ZW35 [Medical]
TSGene100996741
GENETestsLOC100996741
Target ValidationLOC100996741
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100996741
BioCentury BCIQLOC100996741
ClinGenLOC100996741
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100996741
Clinical trialLOC100996741
Miscellaneous
canSAR (ICR)LOC100996741 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100996741
EVEXLOC100996741
GoPubMedLOC100996741
iHOPLOC100996741
TD WIDTH=25% >REVIEW articles
Genes in titleautomatic search in PubMed automatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:49:25 CET 2017

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