Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC101929798 (phosphodiesterase 4D interacting protein pseudogene)

Identity

Other aliasCH17-118O6.3
HGNC (Hugo) -
LocusID (NCBI) 101929798
Atlas_Id 78484
Location 1p11.2  [Link to chromosome band 1p11]
Location_base_pair Starts at 120985692 and ends at 121052167 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC101929798  101929798  phosphodiesterase 4D interacting protein pseudogene
AliasesCH17-118O6.3
GeneCards (Weizmann)LOC101929798
Ensembl hg19 (Hinxton)ENSG00000275585 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000275585 [Gene_View]  chr1:120985692-121052167 [Contig_View]  LOC101929798 [Vega]
ICGC DataPortalENSG00000275585
TCGA cBioPortalLOC101929798
AceView (NCBI)LOC101929798
Genatlas (Paris)LOC101929798
WikiGenes101929798
SOURCE (Princeton)LOC101929798
Genetics Home Reference (NIH)LOC101929798
Genomic and cartography
GoldenPath hg38 (UCSC)LOC101929798  -     chr1:120985692-121052167 -  1p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC101929798  -     1p11.2   [Description]    (hg19-Feb_2009)
EnsemblLOC101929798 - 1p11.2 [CytoView hg19]  LOC101929798 - 1p11.2 [CytoView hg38]
Mapping of homologs : NCBILOC101929798 [Mapview hg19]  LOC101929798 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BI828172 DB221055
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC101929798
Cluster EST : UnigeneHs.692489 [ NCBI ]
CGAP (NCI)Hs.692489
Alternative Splicing GalleryENSG00000275585
Gene ExpressionLOC101929798 [ NCBI-GEO ]   LOC101929798 [ EBI - ARRAY_EXPRESS ]   LOC101929798 [ SEEK ]   LOC101929798 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC101929798 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929798
GTEX Portal (Tissue expression)LOC101929798
Human Protein AtlasENSG00000275585-LOC101929798 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC101929798
DMDM Disease mutations101929798
Blocks (Seattle)LOC101929798
Human Protein Atlas [tissue]ENSG00000275585-LOC101929798 [tissue]
Protein Interaction databases
FunCoupENSG00000275585
BioGRIDLOC101929798
STRING (EMBL)LOC101929798
ZODIACLOC101929798
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease101929798
BioCentury BCIQLOC101929798
ClinGenLOC101929798
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929798
Clinical trialLOC101929798
Miscellaneous
canSAR (ICR)LOC101929798 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC101929798
EVEXLOC101929798
GoPubMedLOC101929798
iHOPLOC101929798
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:48:54 CET 2017

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