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LOC105373297 (endogenous retrovirus group FC1 Env polyprotein)

Identity

Other aliasERVFC1
Fc1env
HGNC (Hugo) -
LocusID (NCBI) 105373297
Atlas_Id 57038
Location Xq21.33  [Link to chromosome band Xq21]
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC105373297  105373297  endogenous retrovirus group FC1 Env polyprotein
AliasesERVFC1; Fc1env
GeneCards (Weizmann)LOC105373297
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  LOC105373297 [Vega]
TCGA cBioPortalLOC105373297
AceView (NCBI)LOC105373297
Genatlas (Paris)LOC105373297
WikiGenes105373297
SOURCE (Princeton)LOC105373297
Genetics Home Reference (NIH)LOC105373297
Genomic and cartography
GoldenPath hg38 (UCSC)LOC105373297  -  
GoldenPath hg19 (UCSC)LOC105373297  -  
EnsemblLOC105373297 - [CytoView hg19]  LOC105373297 - [CytoView hg38]
Mapping of homologs : NCBILOC105373297 [Mapview hg19]  LOC105373297 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC105373297
Gene ExpressionLOC105373297 [ NCBI-GEO ]   LOC105373297 [ EBI - ARRAY_EXPRESS ]   LOC105373297 [ SEEK ]   LOC105373297 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC105373297 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)105373297
GTEX Portal (Tissue expression)LOC105373297
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60507   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60507  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60507
Splice isoforms : SwissVarP60507
PhosPhoSitePlusP60507
Domains : Interpro (EBI)TLV/ENV_coat_polyprotein   
Domain families : Pfam (Sanger)TLV_coat (PF00429)   
Domain families : Pfam (NCBI)pfam00429   
Conserved Domain (NCBI)LOC105373297
DMDM Disease mutations105373297
Blocks (Seattle)LOC105373297
SuperfamilyP60507
Peptide AtlasP60507
Protein Interaction databases
DIP (DOE-UCLA)P60507
IntAct (EBI)P60507
BioGRIDLOC105373297
STRING (EMBL)LOC105373297
ZODIACLOC105373297
Ontologies - Pathways
QuickGOP60507
Ontology : AmiGOmolecular_function  cellular_component  plasma membrane  integral component of membrane  viral envelope  plasma membrane fusion  
Ontology : EGO-EBImolecular_function  cellular_component  plasma membrane  integral component of membrane  viral envelope  plasma membrane fusion  
NDEx NetworkLOC105373297
Atlas of Cancer Signalling NetworkLOC105373297
Wikipedia pathwaysLOC105373297
Orthology - Evolution
OrthoDB105373297
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENP60507
HOGENOMP60507
Homologs : HomoloGeneLOC105373297
Homology/Alignments : Family Browser (UCSC)LOC105373297
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC105373297 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC105373297
dbVarLOC105373297
ClinVarLOC105373297
1000_GenomesLOC105373297 
Exome Variant ServerLOC105373297
ExAC (Exome Aggregation Consortium)LOC105373297 (select the gene name)
Genetic variants : HAPMAP105373297
Genomic Variants (DGV)LOC105373297 [DGVbeta]
DECIPHERLOC105373297 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC105373297 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LOC105373297
DgiDB (Drug Gene Interaction Database)LOC105373297
DoCM (Curated mutations)LOC105373297 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC105373297 (select a term)
intoGenLOC105373297
Cancer3DLOC105373297(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC105373297
Genetic Testing Registry LOC105373297
NextProtP60507 [Medical]
TSGene105373297
GENETestsLOC105373297
Target ValidationLOC105373297
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease105373297
BioCentury BCIQLOC105373297
ClinGenLOC105373297
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105373297
Clinical trialLOC105373297
Miscellaneous
canSAR (ICR)LOC105373297 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC105373297
EVEXLOC105373297
GoPubMedLOC105373297
iHOPLOC105373297
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:16:10 CEST 2017

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