Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC105378052 (uncharacterized LOC105378052)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 105378052
Atlas_Id 77642
Location 6q25.1  [Link to chromosome band 6q25]
Location_base_pair Starts at 149934513 and ends at 149936319 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC105378052  105378052  uncharacterized LOC105378052
Aliases
GeneCards (Weizmann)LOC105378052
Ensembl hg19 (Hinxton)ENSG00000216621 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000216621 [Gene_View]  ENSG00000216621 [Sequence]  chr6:149934513-149936319 [Contig_View]  LOC105378052 [Vega]
ICGC DataPortalENSG00000216621
TCGA cBioPortalLOC105378052
AceView (NCBI)LOC105378052
Genatlas (Paris)LOC105378052
WikiGenes105378052
SOURCE (Princeton)LOC105378052
Genetics Home Reference (NIH)LOC105378052
Genomic and cartography
GoldenPath hg38 (UCSC)LOC105378052  -     chr6:149934513-149936319 +  6q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC105378052  -     6q25.1   [Description]    (hg19-Feb_2009)
EnsemblLOC105378052 - 6q25.1 [CytoView hg19]  LOC105378052 - 6q25.1 [CytoView hg38]
Mapping of homologs : NCBILOC105378052 [Mapview hg19]  LOC105378052 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC040898 HY006365
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC105378052
Cluster EST : UnigeneHs.549678 [ NCBI ]
CGAP (NCI)Hs.549678
Alternative Splicing GalleryENSG00000216621
Gene ExpressionLOC105378052 [ NCBI-GEO ]   LOC105378052 [ EBI - ARRAY_EXPRESS ]   LOC105378052 [ SEEK ]   LOC105378052 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC105378052 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105378052
GTEX Portal (Tissue expression)LOC105378052
Human Protein AtlasENSG00000216621-LOC105378052 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC105378052
DMDM Disease mutations105378052
Blocks (Seattle)LOC105378052
Human Protein Atlas [tissue]ENSG00000216621-LOC105378052 [tissue]
Protein Interaction databases
FunCoupENSG00000216621
BioGRIDLOC105378052
STRING (EMBL)LOC105378052
ZODIACLOC105378052
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease105378052
BioCentury BCIQLOC105378052
ClinGenLOC105378052
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105378052
Clinical trialLOC105378052
Miscellaneous
canSAR (ICR)LOC105378052 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC105378052
EVEXLOC105378052
GoPubMedLOC105378052
iHOPLOC105378052
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:07:50 CEST 2018

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