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LOC107984208 (putative uncharacterized protein LOC439951)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 107984208
Atlas_Id 78938
Location 10p14  [Link to chromosome band 10p14]
Location_base_pair Starts at 11611304 and ends at 11612227 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC107984208  107984208  putative uncharacterized protein LOC439951
Aliases
GeneCards (Weizmann)LOC107984208
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:11611304-11612227 [Contig_View]  LOC107984208 [Vega]
TCGA cBioPortalLOC107984208
AceView (NCBI)LOC107984208
Genatlas (Paris)LOC107984208
WikiGenes107984208
SOURCE (Princeton)LOC107984208
Genetics Home Reference (NIH)LOC107984208
Genomic and cartography
GoldenPath hg38 (UCSC)LOC107984208  -     chr10:11611304-11612227 +  10p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC107984208  -     10p14   [Description]    (hg19-Feb_2009)
EnsemblLOC107984208 - 10p14 [CytoView hg19]  LOC107984208 - 10p14 [CytoView hg38]
Mapping of homologs : NCBILOC107984208 [Mapview hg19]  LOC107984208 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC037281
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC107984208
Cluster EST : UnigeneHs.590986 [ NCBI ]
CGAP (NCI)Hs.590986
Gene ExpressionLOC107984208 [ NCBI-GEO ]   LOC107984208 [ EBI - ARRAY_EXPRESS ]   LOC107984208 [ SEEK ]   LOC107984208 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC107984208 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)107984208
GTEX Portal (Tissue expression)LOC107984208
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDZ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDZ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDZ9
Splice isoforms : SwissVarQ8NDZ9
PhosPhoSitePlusQ8NDZ9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC107984208
DMDM Disease mutations107984208
Blocks (Seattle)LOC107984208
SuperfamilyQ8NDZ9
Peptide AtlasQ8NDZ9
Protein Interaction databases
DIP (DOE-UCLA)Q8NDZ9
IntAct (EBI)Q8NDZ9
BioGRIDLOC107984208
STRING (EMBL)LOC107984208
ZODIACLOC107984208
Ontologies - Pathways
QuickGOQ8NDZ9
Ontology : AmiGOextracellular space  
Ontology : EGO-EBIextracellular space  
NDEx NetworkLOC107984208
Atlas of Cancer Signalling NetworkLOC107984208
Wikipedia pathwaysLOC107984208
Orthology - Evolution
OrthoDB107984208
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ8NDZ9
HOGENOMQ8NDZ9
Homologs : HomoloGeneLOC107984208
Homology/Alignments : Family Browser (UCSC)LOC107984208
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC107984208 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC107984208
dbVarLOC107984208
ClinVarLOC107984208
1000_GenomesLOC107984208 
Exome Variant ServerLOC107984208
ExAC (Exome Aggregation Consortium)LOC107984208 (select the gene name)
Genetic variants : HAPMAP107984208
Genomic Variants (DGV)LOC107984208 [DGVbeta]
DECIPHERLOC107984208 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC107984208 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LOC107984208
DgiDB (Drug Gene Interaction Database)LOC107984208
DoCM (Curated mutations)LOC107984208 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC107984208 (select a term)
intoGenLOC107984208
Cancer3DLOC107984208(select the gene name)
Impact of mutations[PolyPhen2] [SIVT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC107984208
Genetic Testing Registry LOC107984208
NextProtQ8NDZ9 [Medical]
TSGene107984208
GENETestsLOC107984208
Target ValidationLOC107984208
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease107984208
BioCentury BCIQLOC107984208
ClinGenLOC107984208
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD107984208
Clinical trialLOC107984208
Miscellaneous
canSAR (ICR)LOC107984208 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC107984208
EVEXLOC107984208
GoPubMedLOC107984208
iHOPLOC107984208
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:24:16 CEST 2017

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